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Report for CCDS21124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21124.1 Public Mus musculus 7 Lgi4 23 108 98 CCDS HistoryNCBI Gene:243914Re-query CCDS DB by CCDS ID:21124.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039775.8 ENSMUSP00000041579.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039775.8Link to Ensembl Protein Viewer:ENSMUSP00000041579.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039775Re-query CCDS DB by Protein ID:ENSMUSP00000041579
Original member NCBI NM_144556.2 NP_653139.2 Updated not alive Link to Nucleotide Sequence:NM_144556.2Link to Protein Sequence:NP_653139.2Re-query CCDS DB by Nucleotide ID:NM_144556Re-query CCDS DB by Protein ID:NP_653139
Current member NCBI NM_144556.3 NP_653139.2 Accepted alive Link to Nucleotide Sequence:NM_144556.3Link to Protein Sequence:NP_653139.2Re-query CCDS DB by Nucleotide ID:NM_144556Re-query CCDS DB by Protein ID:NP_653139Link to BLAST:NP_653139.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653139.2 537 Q8K1S1 537 100% 0 0

Chromosomal Locations for CCDS 21124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31060021 31060190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31060551 31060622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31061078 31061149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31063104 31063175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31063285 31063356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31063560 31063729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31067095 31067259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31067343 31067848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31068877 31069191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGGAGGGGCGGGCATCTTGTTGTTCCTGTTGGCTTGGGCTGGGGCAGGAGTGGCCTGGAGTCCCCCCA
AAGGAAAGTGCCCTCCACACTGCTCCTGCTCCAAGGAGAACACCCTGTGTGAGGGCTCCCCCGAGCTGCC
TGAGAGCTTCTCCACCACGCTCCTGTCACTCTCTCTCGTCAGGATGGGGGTCTCCCGGCTGAAGGCTGGC
AGCTTCTTAAAGATGCCGTCATTGCACCTGCTCCTCTTCACATCCAATACCTTCTCTGTAATTGAGGGTG
ATGCCTTCATCGGCCTGTCCTACCTGCAGTACCTCTTCATTGAGGACAACAAGATTGGCTCCATCTCCAA
GAACGCCCTGAGGGGACTTCGCTCACTCACCCACCTAAGCCTGGCCAACAACCACCTCGAGGCTCTACCC
AGATTCCTGTTCCGAGGCTTGGAGACTCTGACTCATGTGGACCTCCGTGGTAACCCGTTCCAGTGCGACT
GCAGAGTACTTTGGTTGCTACAGTGGATGCCTACGGTGAATGCCAGTGTGGGCACAGGGGCCTGTGCGGG
TCCCCCTGCCGTTGCTCAGATACAACTGAATCACCTTGACCCTAAGAAGTTCAAGTGTAGAGCCACAGAA
CTGTCCTGGCTCCAGACTGTTGGGGAGTCGGCACTGAGCGTGGAGTCCTTCTCCTATCAGGGGGAACCTC
ACATGGTCCTGGCCCAGCCCTTCGCTGGCCGTTGCCTGATCCTGGTGTGGGACTACAGCCTGCAACGCTT
CAGGCCTGAGGAGGAGCTGTCTGCGCCCTCAGTGGTGTCCTGCAAGCCTCTGGTGCTGGGCCCACGCCTC
TTCATACTGGCTGCCCGCCTGTGGGGAGGCTCACAGCTGTGGTCGCGGTCCAGCCCCGACCTGCGTCTGA
CCCCCGTGCAGGTCCTAGCCCCTCAACGGCTGCTGCGACCCAATGATGCCGAGCTCCTCTGGCTGGATGG
GCAGCCCTGCTTCGTGGTGGCTGATGCCTCCAAGGCTGGCAGCACCACGCTGCTGTGTCGTGATGGGCCG
GGCTTCTACCCACGCCAGAGCCTGCACGCCTGGCACCGCGATACCGATGCGGAGGCCCTGGAGCTGGATG
GCCGACCGCATCTGCTGCTTGCTTCAGCCTCCCAGAGGCCTGTGCTCTTTCACTGGGTTGGTGGCCGCTT
CGAGAGGCGCACGGACATCCCAGAGGCAGAGGACGTCTATGCCACAAAACACTTTCAGGCTGGAGGAGAT
GTGTTCCTGTGCCTGACGCGATACATTGGGGACTCCATGGTCATGCGCTGGGACGGCTCCATGTTCCGAC
TGTTACAGCAACTTCCATCCCGAGGGTCCCATGTCTTCCAGCCACTACTAATTGCCAGAGACCAGTTGGC
TATCCTGGGCAGCGACTTCGCCTTCAGCCAAGTCTTCCGCTTTGAGTCCGATAAAGGGATCCTGGAGCCA
CTACAGGAGTTGGGCCCACCGGCCTTGGTGGCCCCTCGAGCCTTTGCCCAAGTCACCGTAGCAGGAAGAC
GCTTTCTATTCGCAGCGTGCTTCAAGGGCCCCACGCAGATCTACCAGCACCATGAATTGGATCTCAGTGC
CTGA

Translation (537 aa):
MGGAGILLFLLAWAGAGVAWSPPKGKCPPHCSCSKENTLCEGSPELPESFSTTLLSLSLVRMGVSRLKAG
SFLKMPSLHLLLFTSNTFSVIEGDAFIGLSYLQYLFIEDNKIGSISKNALRGLRSLTHLSLANNHLEALP
RFLFRGLETLTHVDLRGNPFQCDCRVLWLLQWMPTVNASVGTGACAGPPAVAQIQLNHLDPKKFKCRATE
LSWLQTVGESALSVESFSYQGEPHMVLAQPFAGRCLILVWDYSLQRFRPEEELSAPSVVSCKPLVLGPRL
FILAARLWGGSQLWSRSSPDLRLTPVQVLAPQRLLRPNDAELLWLDGQPCFVVADASKAGSTTLLCRDGP
GFYPRQSLHAWHRDTDAEALELDGRPHLLLASASQRPVLFHWVGGRFERRTDIPEAEDVYATKHFQAGGD
VFLCLTRYIGDSMVMRWDGSMFRLLQQLPSRGSHVFQPLLIARDQLAILGSDFAFSQVFRFESDKGILEP
LQELGPPALVAPRAFAQVTVAGRRFLFAACFKGPTQIYQHHELDLSA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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