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Report for CCDS57474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57474.1 Public Mus musculus 7 Garin5b 23 108 98 CCDS HistoryNCBI Gene:243822Re-query CCDS DB by CCDS ID:57474.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 57474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174409.1 ENSMUSP00000133885.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174409.1Link to Ensembl Protein Viewer:ENSMUSP00000133885.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000174409Re-query CCDS DB by Protein ID:ENSMUSP00000133885
Original member Current member NCBI NM_172895.3 NP_766483.3 Accepted alive Link to Nucleotide Sequence:NM_172895.3Link to Protein Sequence:NP_766483.3Re-query CCDS DB by Nucleotide ID:NM_172895Re-query CCDS DB by Protein ID:NP_766483Link to BLAST:NP_766483.3

Chromosomal Locations for CCDS 57474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4753575 4753597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4757470 4758817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4759062 4759120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4759214 4759266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4759347 4759450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4759740 4759816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4760012 4760036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4770241 4770496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4770575 4770729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4770947 4771111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGGCACCCGCTGTTATGAGGCGGCTGTGGCGCTTTTTTTTCCCTCCGCCTCCCCCGGAGCCTCCGAAGT
GGGTTCCCATCCTTGGAGAGATGCAGAAGACCCTTCAGATGGCCGAATACCTGCCCCTCCGCCCGCTGCC
CATGTTCGAGAGTAACTTTACCCAGGTAACCAACAATGGGACTCCTGCGTTATTACACAACAAATCCAAC
AAGCTGACTATGGGTGTCGCAGCATCCTTGCCTGGCCTAATGCTGCCTGACATTCTGTTGATTGCTCGGC
CCCCCGAGGACGAGGAGTGCTCCAGTCTCATCCTAACCAGGATGATCCCACTAGACCTTGCCCGCCTGTA
TGTCGATGATCTGCCCACCTGGCGACTGAAACTGCGTCTGAGATCCGGCCGTCATTATTTCCTGGCACTG
GATGCCCCTGAACATGAGCTGGCCTTTCTGTTTGACCGCTGGATTCGCCTCATCAACATGCTTCGAGGGC
CTAAATTATCCAAGACACCAAAAACAGAACCCTCCGTGCTGGAAATACCCCCAGAAGTCACTCTTGCCTC
CACTTGGCACTTTCAGGTCCAGTCTCAAGGCAAACTTACAGTTGAAGTTGCTGATCCCACCTTTCCTTGC
AAAATATTCTCTTCTCATAAACCAAAGACCAAGATGAAGCTGACCAAGCCAATCAAGCACTCGCTCAGGT
CTCAGGCTGTGGGTGACTCTGTGCCTCTCATCTGGTCACAACTGCAATCTTCTGAGGATCAGATGCAAGT
CACAAAAACCAAGTCCTATCCACATGCCTGCTCTGATAGATCCGAACCTCTAATCCATGTTTCTGACAAG
GCCAGCATCACCATCCGGACCATCTTCAGCATCATCTCTAACACGATAAACCAGGCCCACAAATCTGATT
CTGAGGAAGACACAAGCCAGGGTCGTCTAATGGAAACTCCTTCAAAGTGCCTTTCTCAGAACAGCACTGG
TTTTCCTGTCACGGTTTCCTCTAATCAACTGGACACCCTCCTGTGGGCACAAAACCTTGAAGATCTCATG
AATCCTGAATATGCCACACTGTCTTCCTTGAACACATCTCACCCTCCTGCCTTCTACATCTTTCCTCCCA
ATCCCTCCTTTCTGAAGTCCAAAGACAAGGCCAGACCCACAGGCTCAAAGAAACACGTGAGCCCACTGTC
TTCCCACAAAGCTGCATGTGTCCCCATCGAATCGAGGAAAATGCCATTCATTTTGGACCAGTCTAACAAG
GTACCGGCTAAGCCTGCTCCAGCTCAGATGGCCTCAGCCCTTCCCACTCCGTCTCGGAAGACCCCGACTG
CACTGTGGTCAAGAGGGAAGGCTTCAGGTGCACTTGGCCATTTCTTTAAGTCTCAGCCTTCTGTTTCCCA
GAAGACCCCAACCACCCCTGGGCAGCCCTTGAAGCCCCAAGTTATAACTACCCCAACCCAGAAAACTTTA
ACACCGAATCAGAAGCTTCTACAAGCACCTGCACATTCCCAGAAAGCCATGCACACCAAAAAGGACCATC
TAATTGTAAATATCCGGTCTCAGAAGGATCCAACTGCCCCGTACCAGAAAGCTCTCAACTCCCGGGCAAA
GGCCTCTGGGGATCCCAGGACATTACAGGGAGGAGGCGTGCTTGAGAGAAAGACTGAAGGGAAACAGGAA
CCTGTGCTGTTAGTGGGAGGGCAGAATACAACAGTGGTAGATGTGAGGGCCCAGACCATGCCCCTGCATC
TGCCCTTTGCCACTACCAAGAAGCAGTCCAAGGAGATCTTGATTAGCGAAACCCAAGAGGCCTTGAAGGG
CAGGGAAAAGTTAGAAGACTGTGCCCACAAGATGAAGGAGACAACTGTGAACTTGCCCAATCTAAAGTCC
AAGGAGACAGAGATGCAGAAGAGGGTCTTGACCGAGGAGATAGCTGTTGAGAACCCCTACACAGAGGACA
ATAGGCCTTTCTCTGCAGAGGGGCTCGCCCTTGCCAAGATGAAGATCATGGCCAACTCCAAACACCAGCG
ACTGAAGCCAGCTACTATCTCTCTGCCCTCCTCATTCTCTGTGGCTTCCAATGTGTCTTCCATGTTGGCC
AATTTGCCCTTTGACACCAGCCAGACAACCTTTTCAGATGGATCACAAGTAGTAGTCATAGAACAATCAG
GGTCCTGTACTAAAGTGAACACGGAGAACACACGGCACCAGATGGAGAGGAAGCCTGCAGAGGACTTGCC
AGTAAGCAGCAACCCAAGGATTTAA

Translation (754 aa):
MAPAVMRRLWRFFFPPPPPEPPKWVPILGEMQKTLQMAEYLPLRPLPMFESNFTQVTNNGTPALLHNKSN
KLTMGVAASLPGLMLPDILLIARPPEDEECSSLILTRMIPLDLARLYVDDLPTWRLKLRLRSGRHYFLAL
DAPEHELAFLFDRWIRLINMLRGPKLSKTPKTEPSVLEIPPEVTLASTWHFQVQSQGKLTVEVADPTFPC
KIFSSHKPKTKMKLTKPIKHSLRSQAVGDSVPLIWSQLQSSEDQMQVTKTKSYPHACSDRSEPLIHVSDK
ASITIRTIFSIISNTINQAHKSDSEEDTSQGRLMETPSKCLSQNSTGFPVTVSSNQLDTLLWAQNLEDLM
NPEYATLSSLNTSHPPAFYIFPPNPSFLKSKDKARPTGSKKHVSPLSSHKAACVPIESRKMPFILDQSNK
VPAKPAPAQMASALPTPSRKTPTALWSRGKASGALGHFFKSQPSVSQKTPTTPGQPLKPQVITTPTQKTL
TPNQKLLQAPAHSQKAMHTKKDHLIVNIRSQKDPTAPYQKALNSRAKASGDPRTLQGGGVLERKTEGKQE
PVLLVGGQNTTVVDVRAQTMPLHLPFATTKKQSKEILISETQEALKGREKLEDCAHKMKETTVNLPNLKS
KETEMQKRVLTEEIAVENPYTEDNRPFSAEGLALAKMKIMANSKHQRLKPATISLPSSFSVASNVSSMLA
NLPFDTSQTTFSDGSQVVVIEQSGSCTKVNTENTRHQMERKPAEDLPVSSNPRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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