NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5108.1 Public Homo sapiens 6 CALHM5 24 110 108 CCDS HistoryNCBI Gene:254228Re-query CCDS DB by CCDS ID:5108.1Re-query CCDS DB by GeneID:254228See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368599.4 ENSP00000357588.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368599.4Link to Ensembl Protein Viewer:ENSP00000357588.3Re-query CCDS DB by Nucleotide ID:ENST00000368599Re-query CCDS DB by Protein ID:ENSP00000357588
Original member Current member NCBI NM_153711.5 NP_714922.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153711.5Link to Protein Sequence:NP_714922.1Re-query CCDS DB by Nucleotide ID:NM_153711Re-query CCDS DB by Protein ID:NP_714922Link to BLAST:NP_714922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714922.1 309 Q8N5C1 309 100% 0 0

Chromosomal Locations for CCDS 5108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116511697 116512236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116515600 116515989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGATGCTTTTCAGGGCATTTTAAAATTCTTCCTTAATCAGAAAACTGTTATTGGCTACAGCTTCATGG
CTCTGCTGACCGTGGGAAGTGAGCGTCTCTTTTCTGTTGTGGCTTTTAAGTGCCCCTGCAGCACTGAGAA
TATGACCTATGGGCTGGTTTTCCTCTTTGCTCCTGCCTGGGTGTTACTGATCCTGGGATTCTTTCTGAAC
AATAGGTCGTGGAGACTCTTCACAGGCTGCTGTGTGAATCCCAGGAAAATCTTTCCCAGAGGCCACAGCT
GCCGTTTCTTCTACGTCCTCGGCCAGATCACTCTGAGCTCATTGGTGGCTCCAGTGATGTGGCTTTCTGT
GGCTCTGCTCAATGGAACTTTCTATGAATGTGCCATGAGCGGGACGAGAAGTTCAGGACTCCTGGAACTG
ATTTGCAAGGGTAAGCCCAAAGAGTGCTGGGAAGAACTTCACAAAGTATCTTGTGGCAAAACTAGCATGC
TACCTACCGTCAATGAAGAACTGAAACTCTCCCTTCAGGCCCAGTCTCAGATTCTAGGATGGTGCCTGAT
TTGTTCAGCGTCTTTCTTCTCTCTGCTCACCACATGTTATGCTCGCTGCCGATCTAAAGTTAGCTACCTT
CAGCTGAGTTTTTGGAAGACATATGCACAAAAGGAGAAGGAGCAGTTGGAAAATACATTTCTGGACTATG
CCAACAAGCTGAGCGAGAGGAACCTGAAATGTTTTTTTGAAAACAAGAGGCCAGATCCTTTTCCCATGCC
TACGTTTGCTGCCTGGGAGGCTGCTTCAGAGCTGCATTCTTTCCACCAAAGCCAGCAACACTATAGCACC
CTCCACAGAGTGGTGGACAATGGTCTGCAACTTAGCCCTGAGGATGATGAGACGACAATGGTCCTTGTGG
GTACTGCCCACAATATGTAG

Translation (309 aa):
MDAFQGILKFFLNQKTVIGYSFMALLTVGSERLFSVVAFKCPCSTENMTYGLVFLFAPAWVLLILGFFLN
NRSWRLFTGCCVNPRKIFPRGHSCRFFYVLGQITLSSLVAPVMWLSVALLNGTFYECAMSGTRSSGLLEL
ICKGKPKECWEELHKVSCGKTSMLPTVNEELKLSLQAQSQILGWCLICSASFFSLLTTCYARCRSKVSYL
QLSFWKTYAQKEKEQLENTFLDYANKLSERNLKCFFENKRPDPFPMPTFAAWEAASELHSFHQSQQHYST
LHRVVDNGLQLSPEDDETTMVLVGTAHNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH