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Report for CCDS18973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18973.1 Public Mus musculus 4 Slc45a1 23 108 98 CCDS HistoryNCBI Gene:242773Re-query CCDS DB by CCDS ID:18973.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18973.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037827.9 ENSMUSP00000036774.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037827.9Link to Ensembl Protein Viewer:ENSMUSP00000036774.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037827Re-query CCDS DB by Protein ID:ENSMUSP00000036774
Original member NCBI NM_173774.3 NP_776135.2 Updated not alive Link to Nucleotide Sequence:NM_173774.3Link to Protein Sequence:NP_776135.2Re-query CCDS DB by Nucleotide ID:NM_173774Re-query CCDS DB by Protein ID:NP_776135
Current member NCBI NM_173774.4 NP_776135.2 Accepted alive Link to Nucleotide Sequence:NM_173774.4Link to Protein Sequence:NP_776135.2Re-query CCDS DB by Nucleotide ID:NM_173774Re-query CCDS DB by Protein ID:NP_776135Link to BLAST:NP_776135.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776135.2 751 Q8BIV7 751 100% 0 0

Chromosomal Locations for CCDS 18973.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150629531 150629797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150630918 150631123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150633313 150633489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150634887 150635040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150637974 150638710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150642446 150642670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150643289 150643381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150643948 150644344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGATCCCCCCAGCAAGCAGCACCCCTCCGGGAGAGGCCGTCATCCCCAGTGTGGCTCCTCAGGACTTCT
GGAGGTCTCCCATCTCCAGCTACTCAGGGTCCGTGACAGGACACATCAGCCACCGGGCCAACAACTTCAA
ACGCCACCCCAAGAGAAGGAAGTACATTCGGCCCTCTCCGCCCCCACCCCCCAACACCCCATGTCCCATC
GAGCTGGTGGACTTTGGGGACTTGCACCCACAGAGGTCCTTTTGGGAACTGCTCTTCAATGGCTGCATTC
TGTTTGGTATCGAATTCAGCTACGCCATGGAGACCGCGTACGTGACTCCGGTACTCCTGCAAATGGGCCT
GCCAGACCAGCTCTACAGCCTAGTGTGGTTCATCAGCCCCATCCTCGGATTCTTGCTGCAGCCTCTGTTG
GGTGCCTGGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTGGCCATAG
GGGCACTGCTGGGCCTTTCGCTCTTGCTCAATGGAAGGGACATTGGCATGGCCTTGGCTGACACAGCCAC
CAACCACAAGTGGGGCATCCTCCTGACAGTGTGCGGGGTGGTGCTGATGGACTTCAGTGCAGACTCTGCA
GATAACCCCAGCCACGCCTACATGATGGATGTGTGCGGCCCGGTAGACCAGGACCGAGGCCTGAACATCC
ATGCCCTCATGGCGGGTCTTGGAGGCGGGTTTGGCTATGTGGTCGGAGGCATCCATTGGGACAAGACCAG
CTTCGGGAGGGCCCTGGGGGGCCAGCTCCGTGTCATCTATGTCTTCACTGCCATAACCCTGAGTGTCACC
ACCGTGCTCACCCTGATTAGCATCCCCGAGAGACCCCTTCGGCCCCTGGGGGAGAAGAGGACAGCTATGA
AGAGCCCAAGCCTCCCATTGCCCCCCTCCCCACCTGTCCTGTTGGAGGAGGGGGCTGGTGACGCCCTTCC
CTCTACTACAGCCACCAGCCTGTACGCCAGCTTCTCCAGCCCCATCTCCCCACCCAGCCCGCTCACCCCC
AAGTATGGCAGCTTCATCAGCAGGGACAGCTCCCTCACAGGCATCAATGAGTTCGCATCATCCTTTGGCA
CCTCCAACATAGACAGCGTGCTCATTGACTGTTTCACAGCGGGCCATGACAATTACTTGGCTCTCCCCAG
CAGTGTCCCGAGGCAGGCCATCAGTGTCAGCTTTCCCCGGGCCCCCGATGGCTTCTACTGCCAGGAGAGG
GGGCTGGAGAGGAGAGAGGGACCCCTCACCTTGGGCTCGGATGGAGATGTGCTAAGAGTAGGCTCTCTGG
ACACCTCAAAGCCACGGGCCTCGGGGATCCTGAAGAGGCCCCAGACCTTGGCTCTCCCAGATGTGGCTGG
AGGAAATGGCCCTGAAACCAGCAGAAGAAGGAATGTGACCTTCAGCCAACAGGTCGCAAACATTCTCCTG
AACGGTGTGAAATATGAGAGCGAGCTGACGGGCTCCAGCGAGCAGTCGGAGCAGCCACTGTCTCTGCGGC
ATCTCTGTTCCACCATCTACAATATGCCCAAGGCGCTGCGCAATCTCTGTGTCAATCACTTTCTGGGGTG
GCTCTCATTTGAGGGCATGCTGCTCTTTTACACGGACTTCATGGGCGAGGTGGTGTTCCAGGGAGACCCA
AAGGCACCGCACACGTCGGAAGCATATCAGAAGTACAACAGCGGTGTCACCATGGGCTGCTGGGGCATGT
GCATCTATGCCTTCAGTGCAGCCTTCTACTCAGCTATCCTGGAGAAACTGGAGGAGTGTCTGAGCGTCCG
CACCCTCTACTTCATCGCCTACCTCGCCTTCGGCCTGGGGACCGGGTTGGCCACCCTCTCCAGGAACTTG
TACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCCTGCCCTACTCCC
TGCTCTGTGATTACTACCAGAGTAAGAAGTTTGCAGGGTCCAGTGCGGATGGCACACGGCGTGGCATGGG
CGTAGACATCTCGCTGCTTAGCTGCCAGTACTTTCTGGCTCAGATCCTTGTCTCTCTGGTCCTGGGGCCC
CTGACCTCAGCTGTTGGCAGTGCCAATGGTGTGATGTACTTCTCCAGCCTCGTGTCCTTCCTCGGCTGCC
TCTACTCTTCCCTGTGTGTCACCTACGAAATTCCTTCTGTTGATGCAGCCGATGAGGAGCGCCAGCCCCT
CCTGTTGAATGTCTGA

Translation (751 aa):
MIPPASSTPPGEAVIPSVAPQDFWRSPISSYSGSVTGHISHRANNFKRHPKRRKYIRPSPPPPPNTPCPI
ELVDFGDLHPQRSFWELLFNGCILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPLL
GAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGMALADTATNHKWGILLTVCGVVLMDFSADSA
DNPSHAYMMDVCGPVDQDRGLNIHALMAGLGGGFGYVVGGIHWDKTSFGRALGGQLRVIYVFTAITLSVT
TVLTLISIPERPLRPLGEKRTAMKSPSLPLPPSPPVLLEEGAGDALPSTTATSLYASFSSPISPPSPLTP
KYGSFISRDSSLTGINEFASSFGTSNIDSVLIDCFTAGHDNYLALPSSVPRQAISVSFPRAPDGFYCQER
GLERREGPLTLGSDGDVLRVGSLDTSKPRASGILKRPQTLALPDVAGGNGPETSRRRNVTFSQQVANILL
NGVKYESELTGSSEQSEQPLSLRHLCSTIYNMPKALRNLCVNHFLGWLSFEGMLLFYTDFMGEVVFQGDP
KAPHTSEAYQKYNSGVTMGCWGMCIYAFSAAFYSAILEKLEECLSVRTLYFIAYLAFGLGTGLATLSRNL
YVVLSLCTTYGILFSTLCTLPYSLLCDYYQSKKFAGSSADGTRRGMGVDISLLSCQYFLAQILVSLVLGP
LTSAVGSANGVMYFSSLVSFLGCLYSSLCVTYEIPSVDAADEERQPLLLNV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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