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Report for CCDS38944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38944.1 Public Mus musculus 4 Pramel12 23 108 98 CCDS HistoryNCBI Gene:242736Re-query CCDS DB by CCDS ID:38944.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037356.7 ENSMUSP00000041323.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037356.7Link to Ensembl Protein Viewer:ENSMUSP00000041323.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037356Re-query CCDS DB by Protein ID:ENSMUSP00000041323
Original member Current member EBI ENSMUST00000059790.10 ENSMUSP00000058676.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059790.10Link to Ensembl Protein Viewer:ENSMUSP00000058676.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059790Re-query CCDS DB by Protein ID:ENSMUSP00000058676
Original member Current member NCBI NM_001355724.1 NP_001342653.1 Accepted alive Link to Nucleotide Sequence:NM_001355724.1Link to Protein Sequence:NP_001342653.1Re-query CCDS DB by Nucleotide ID:NM_001355724Re-query CCDS DB by Protein ID:NP_001342653Link to BLAST:NP_001342653.1
Original member Current member NCBI NM_172877.3 NP_766465.1 Accepted alive Link to Nucleotide Sequence:NM_172877.3Link to Protein Sequence:NP_766465.1Re-query CCDS DB by Nucleotide ID:NM_172877Re-query CCDS DB by Protein ID:NP_766465Link to BLAST:NP_766465.1

Chromosomal Locations for CCDS 38944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143416666 143416952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143417373 143417960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143418838 143419405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGAGTGTCCAGGACCCACCCACACTCCTGCAGCTGTCAGTACAGAGACTACTGAGGGACGAGGCCCTGG
CCATTTCTTCTCTGCAGTACCTTCCCAGGGCGCTTTTCCCACTGCTCTTCAAGGAAGCCTTCAATCACAG
ACAAACTAATGTCCTGAGGGCCATGGTGGCAGTGTGGCCCTTTCCCTTCCTCCCTCTGGGGACCCTGATG
AAGACTCCCCACCTGGAGATCTTGCAGGCTGTGCTGGATGGAGTAGACATGCTTTGGACACAGAAGGTTC
TTCCCAGAAGGAGGAAGCTCCAAGTGCTGGACCTGAGGAATGTGTACCATGACTTCTGGGATGTTTGGGT
TGGACCAGAGGATGGAGACCACTCAGCAGAGACTGTGTGTGAAAAGCAGATAGCAAAGCGCCTTCATCAA
TATGCACTGAGGCGACGTTTGAAGGTGGTCACTGACCTGTGCCTCAGGTTCCATTTGAATGAACACCAAG
CATACTTGTTACAGTGGGCCCAGCAGAGAAGAAGTTCCATACGGCTATGCTGTGTGAAGATGCAGATTTG
GGCTTTGCCTGTGTACACTGTCAGGAAGGTCTTGATGGTGTTCCAGCCAGACAGCATCCAAGAATTGGAA
CTAAATACAGGTTGGAGCCTGTCCACTCTGGTGCATTTTGCATCTTACCTGGACCAGATGAGAAACCTTC
AAAAACTCCTTTTAACACGGATTCACAAGAACACCTTCAAGGTTCTAAATACCTCCTCGGACATCCAGAA
GTGTATCACCAAGTTTGTCTCTCAGTTCTCCAAACTCAACTCTCTCCAGCATCTCTCCATGAATGGCATC
TACTTTTCCAGTGAGCACATGAAACAGTTGTTCAGGTACCTGAAGACCCCGTTGGAGACTCTGTCCATCA
CCATGTGCAAGCTTTCACATTTAGACTTGAATTCCTTGTCCCAGAGTCAGAGCCTCCATCAGCTCAAACA
GCTGAACCTGAGACTTGTGAAGTTGATTGACTTACGTCCTGTGCCTTTCCACGACCTCCTCAGGAGTGTT
GCAGGCACCCTGCAGACCCTAGAACTGGAGGGCTGTTGGATGGTGGACTCCCAGCTCACTGCCCTCCTGC
CTGCCCTGAGCCAGTGTTCCCAGCTCACCAGGGTCAACTTCTATGACAATGACATCTCCATGGCTGTTCT
AAAGGACCTTCTGTATCACACAGCCAGTCTGAGCCAGCTGACCCAGGAGCTGTATCCTGCCCCTCTGGAG
TGCTATGATGACACGGGTGATGTCCTTATGGGAAGATTTGTCCAACTTTGTCCTGAGCTTATGGAGACAC
TCATTACTGTAAGGCAGCCCAAGAATGTCTCCTTTGCTACGTATATCTGCCATGAATGTTGCCAGCGCTG
TGTCTATGGCCTGGAGACAAAACTTTGTCGTTGTCGGCAGTAA

Translation (480 aa):
MSVQDPPTLLQLSVQRLLRDEALAISSLQYLPRALFPLLFKEAFNHRQTNVLRAMVAVWPFPFLPLGTLM
KTPHLEILQAVLDGVDMLWTQKVLPRRRKLQVLDLRNVYHDFWDVWVGPEDGDHSAETVCEKQIAKRLHQ
YALRRRLKVVTDLCLRFHLNEHQAYLLQWAQQRRSSIRLCCVKMQIWALPVYTVRKVLMVFQPDSIQELE
LNTGWSLSTLVHFASYLDQMRNLQKLLLTRIHKNTFKVLNTSSDIQKCITKFVSQFSKLNSLQHLSMNGI
YFSSEHMKQLFRYLKTPLETLSITMCKLSHLDLNSLSQSQSLHQLKQLNLRLVKLIDLRPVPFHDLLRSV
AGTLQTLELEGCWMVDSQLTALLPALSQCSQLTRVNFYDNDISMAVLKDLLYHTASLSQLTQELYPAPLE
CYDDTGDVLMGRFVQLCPELMETLITVRQPKNVSFATYICHECCQRCVYGLETKLCRCRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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