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Report for CCDS18519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18519.1 Public Mus musculus 4 Hpdl 23 108 98 CCDS HistoryNCBI Gene:242642Re-query CCDS DB by CCDS ID:18519.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055436.4 ENSMUSP00000062327.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055436.4Link to Ensembl Protein Viewer:ENSMUSP00000062327.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055436Re-query CCDS DB by Protein ID:ENSMUSP00000062327
Original member Current member NCBI NM_146256.3 NP_666368.1 Accepted alive Link to Nucleotide Sequence:NM_146256.3Link to Protein Sequence:NP_666368.1Re-query CCDS DB by Nucleotide ID:NM_146256Re-query CCDS DB by Protein ID:NP_666368Link to BLAST:NP_666368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666368.1 371 Q8K248 371 100% 0 0

Chromosomal Locations for CCDS 18519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116820147 116821262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGACTGCGCCCGCCCGTCGCCTGTGTCACATCGCTTTCCATGTACCAGCTGGGCAGCCCCTAGCGAGGG
ACCTACATCGTGTCTTCGGCTTCCAGCCCCTGGCGGTGAGGGAAGCAGGCGGCTGGAGACAGCTGGCCCT
GCGCAGCGGGGACGCTGTCTTTCTAGTGAATGAGGGTACCGGGCCCCAGGAGCCACTGTACAGCCTGGAC
CCGCATCATTCGGTGCCCAGTGCCACGAACCTGTGCTTCGACGTGGAGGATGTGGACGGCGCCGCCCGCG
CGCTGGCGGCTCGCGGCTGCATCATGCCGGTACCACCCACTAGGGTGAGAGATGCACAGGGCACAGCCAC
CTACACAGTGCTCAGCTCTCCGGCTGGTAATCTAAGCCTTACGTTGCTGCAGCGTGCTGGCTATCGCGGA
TCCTTCCTGCCCGGGTTCAGACCTCTGCCTTGCACACCTGGCCCAGGTTGGGTCAGCCACGTGGACCACT
TGACCTTGGCCTGCACCTCCGGCAGCTCCCCTATGCTTATGCGCTGGTTCCACGACTGCCTAGGCTTTCA
TCACTTGCCGCTGAGCCCAGGTGAGGATCCGGAGATGGGCCTCAAGGTGGCTGCAGGGTCTGGGCGAGGG
GGACTACGGCTTACTGCCTTGCAGACTCCGCCGAATAATACTGTCCCCACCCTCGTGCTGGCGGAGTCCC
TACCGGGACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCCGGCATGGGGGGCCAGGCCTGCA
GCACGTAGGACTGTACACTCCTAACATCATAGATGCTTCTGAGGGAATGGCGAAGGCGGGATGCCGGCTT
CTGACTCCTCCTGAAGCTTATTACCAGCAGCCCGGCAAAGAAGAACAAATTCTAGCCGCAGGGCACAAGC
CTGGCCTTCTAGAACGGCAGGGAATCCTGCTGGATGGTGATAAAGACGAATTTTTGCTTCAGGTCTTCAC
CAAGTCCCTCTTCGCCGAAGACACTTTCTTCCTGGAGCTGATTCAGAGACAGGGGGCCACAGGCTTTGGC
CAGAACAACATCAGGGCACTATGGCAGTCGGTGCAAGAGGAAGCAGCCAGGGCCCAGGGAGCCTAA

Translation (371 aa):
MTAPARRLCHIAFHVPAGQPLARDLHRVFGFQPLAVREAGGWRQLALRSGDAVFLVNEGTGPQEPLYSLD
PHHSVPSATNLCFDVEDVDGAARALAARGCIMPVPPTRVRDAQGTATYTVLSSPAGNLSLTLLQRAGYRG
SFLPGFRPLPCTPGPGWVSHVDHLTLACTSGSSPMLMRWFHDCLGFHHLPLSPGEDPEMGLKVAAGSGRG
GLRLTALQTPPNNTVPTLVLAESLPGLNSKQDQVEQFLTRHGGPGLQHVGLYTPNIIDASEGMAKAGCRL
LTPPEAYYQQPGKEEQILAAGHKPGLLERQGILLDGDKDEFLLQVFTKSLFAEDTFFLELIQRQGATGFG
QNNIRALWQSVQEEAARAQGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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