NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18392.1 Public Mus musculus 4 Raver2 23 108 98 CCDS HistoryNCBI Gene:242570Re-query CCDS DB by CCDS ID:18392.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038463.14 ENSMUSP00000043142.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038463.14Link to Ensembl Protein Viewer:ENSMUSP00000043142.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038463Re-query CCDS DB by Protein ID:ENSMUSP00000043142
Original member NCBI NM_183024.1 NP_898845.1 Updated not alive Link to Nucleotide Sequence:NM_183024.1Link to Protein Sequence:NP_898845.1Re-query CCDS DB by Nucleotide ID:NM_183024Re-query CCDS DB by Protein ID:NP_898845
Current member NCBI NM_183024.2 NP_898845.1 Accepted alive Link to Nucleotide Sequence:NM_183024.2Link to Protein Sequence:NP_898845.1Re-query CCDS DB by Nucleotide ID:NM_183024Re-query CCDS DB by Protein ID:NP_898845Link to BLAST:NP_898845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898845.1 673 Q7TPD6 673 100% 0 0

Chromosomal Locations for CCDS 18392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101069114 101069329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101096253 101096319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101102608 101103077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101107203 101107394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101120453 101120579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101131264 101131346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101133587 101133691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101133855 101133966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101135997 101136253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101137711 101137819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101139095 101139231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101150332 101150478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGGCGGCGCGGGGAGGCGGCGCGGGGGGCGCGGGCTCGGGATCCGGACCCTCTGCTGGGACGGCGGGGG
AGGCCGCGGAGCCCGCGCTGCGCCCGGGGGAGGTGGCTGCGCTGCACCCCCAGGAGGTGGCTGCACGGCT
GCAGCGGATGCGACGGGAGCTGAGCAACCGGCGGAAAATCCTAGTGAAAAACCTGCCCCAGGACAGCAGC
TCCCAGGAGGTTCATGAGTTATTACAGGACTATGAGCTAAAGTATTGCTATGTGGACAGGAATAAACGAA
CAGCTTTTGTTACCTTATTGAATGGGGAGCAGGCGCAGAGCGCGATTCAGAGGTTTCATCAGTTTTCTTT
CCGAGGCAGAGAGTTGACAGTGCAGCTGCAGCCCACAGACGCTCTCTTGTGCATCACCAACCTGCCCATC
TCCTTCACCTTAGAAGAGTTTGAAGAACTCGTCCGTGCCTATGGCAACATCGAGAGATGTTTTTTGGTCT
ACAGTGAAGTTACTGGCCACTCCAAAGGCTACGGGTTTGTGGAGTACATGAAGAAGGACTTTGCTGCCAA
GGCCAGACTGGAGCTACTGGGCAGGCAGATGGGAGCCTCGGCGCTCTTCGCACAGTGGATGGATGTTAAT
CTCTTGGCCTCGGAGCTCATCCATTCTAAGTGCCTTTGTATAGATAAACTCCCCAGTGACTACAGCGATT
CGGAAGAGCTCTTGCAACTTTTTTCCGGTATCCATAAACCTGTGTTTTGCCAGCTTGCACAGGATGAAGG
AAGTCACGGTGGTGGCTTTGCGGTGGTTGAATATAGCACTGCGGAGCATGCCGAAGAGGTTCAGCAGGTG
GCAGATGGCATCACCATCAAGGGGAGCCAAGTTCAACTGTCCTTCTGCGCCCCAGGAGCACCAGGGCGAA
GCACTCTAGCAGTCCTCATAGCAGCTCAGCGCGCGATGCACAGTAATCAAAAGGGATTACTGCCAGAACC
CAATCCGGTACAGATTATGAAAAGTTTAAACAACCCTGCCATGTTACAAGTTCTTCTGCAGCCCCAGCTA
TGCGGACGAGCCATGAAGCCAGTTCTCGGAGTCGCGCCCAGCTTATCTCACCTGCTGAGTCCGTCACTCC
CCTCCGCCATCTTACACTTCAGTAAAGCACAGCAGAGCTCAGCTGTGGGTAATACATCGTCCTTAATCCT
TCAGAACCTGTCTCCCTTGCCCTTGATACAGCAACAGTTGATGAAGTTTGACAATGCCCACACTAACAAT
AAGCCTGGCTTGCTGGGAGAGCCTCCTGCCATGGTACTGCAGCCTGCTCTGGCGATAGGGCCACCGCTTC
CACTGAAAACGGACCTGGGACACCATGGCGAAGCACACAAAACATCTAACCTGATTCCACCTCAGACGAC
ATTGGCAGCCGGGCTGGGCATGCTGCCGTTCTTCTCAAACCAGCTCCCTGCTGGACAAGCCGGCCCGGGG
CGTGGGACCACTCAGGAGAAACAGTCCGCTTCGGTGAGCATTAGCGAAGCTAGCTTCTCAGGGTCGCAGC
ATTACCTGCAGACCTTCCCAGGCCTTCCTGCTGGAGGCCCGCTGACGGGCAACCAGAAGACACCGCAGAG
CCAGCCAAAAGGCACAGAGGTTGCCTCTAAGAATCAGACTTCACTCTTGGGAGAACCACCAAAAGAGATC
CGGCTCAGTAAAAATCCATATTTGAATTTGGCAAGTGTGCTACCCAGTGTGTGCCTATCCACTGCAGGTA
AAGGCATGCCTCCGAAGACTGGAATTGCGAGCAACATTCTGGATGCGATCTCTCAGGGAAGTGAGTCCCA
GCATGCACTGGAGAAGTGCATCGCCTATTCTCCATCCATCGAGGATTATGCCCAGGCATCCTCCTTGAGG
AATGAGAAGCGAGGCTCCTCCTATCTCATCTCTGCCCCAGAAGGAGGCCCGGTAGAACTCGCTGGCCAGC
ACCCTCAGGACACCGGAGTGAGCTACACAGAAACCTACTTGAAAAAGAAGCGTGTGTACTAA

Translation (673 aa):
MAARGGGAGGAGSGSGPSAGTAGEAAEPALRPGEVAALHPQEVAARLQRMRRELSNRRKILVKNLPQDSS
SQEVHELLQDYELKYCYVDRNKRTAFVTLLNGEQAQSAIQRFHQFSFRGRELTVQLQPTDALLCITNLPI
SFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASALFAQWMDVN
LLASELIHSKCLCIDKLPSDYSDSEELLQLFSGIHKPVFCQLAQDEGSHGGGFAVVEYSTAEHAEEVQQV
ADGITIKGSQVQLSFCAPGAPGRSTLAVLIAAQRAMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQL
CGRAMKPVLGVAPSLSHLLSPSLPSAILHFSKAQQSSAVGNTSSLILQNLSPLPLIQQQLMKFDNAHTNN
KPGLLGEPPAMVLQPALAIGPPLPLKTDLGHHGEAHKTSNLIPPQTTLAAGLGMLPFFSNQLPAGQAGPG
RGTTQEKQSASVSISEASFSGSQHYLQTFPGLPAGGPLTGNQKTPQSQPKGTEVASKNQTSLLGEPPKEI
RLSKNPYLNLASVLPSVCLSTAGKGMPPKTGIASNILDAISQGSESQHALEKCIAYSPSIEDYAQASSLR
NEKRGSSYLISAPEGGPVELAGQHPQDTGVSYTETYLKKKRVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH