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Report for CCDS50273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50273.1 Public Mus musculus 18 Spinkl 23 108 98 CCDS HistoryNCBI Gene:77424Re-query CCDS DB by CCDS ID:50273.1Re-query CCDS DB by GeneID:77424See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066328.4 ENSMUSP00000063376.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066328.4Link to Ensembl Protein Viewer:ENSMUSP00000063376.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066328Re-query CCDS DB by Protein ID:ENSMUSP00000063376
Original member Current member NCBI NM_183123.2 NP_898946.1 Accepted alive Link to Nucleotide Sequence:NM_183123.2Link to Protein Sequence:NP_898946.1Re-query CCDS DB by Nucleotide ID:NM_183123Re-query CCDS DB by Protein ID:NP_898946Link to BLAST:NP_898946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898946.1 90 Q8CEK3 90 100% 0 0

Chromosomal Locations for CCDS 50273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44166624 44166672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44168046 44168161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44169115 44169161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44174532 44174592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGTCCTCAACATGGATCAAATTTCTTTTTATTCTGACTTTGGTGCTTCTTCCTTATTCTGTGTTTTCAG
TGAATATCTTTGCAGGTCCAGAGAATGTTATTAAAGAGCCAAATTGCACCATGTATAAGAGTAAATCTGA
GTGCTCCAATATCGCTGAGAACCCAGTTTGTGCAGATGATAGAAATACATATTACAATGAGTGTTACTTC
TGCATAGAAAAAGTAGTGGAAAAACTTAAATATAGGTATCATGGTATTTGTATTTATAAATAA

Translation (90 aa):
MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYF
CIEKVVEKLKYRYHGICIYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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