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Report for CCDS48565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48565.1 Public Mus musculus 10 Ccdc138 23 108 98 CCDS HistoryNCBI Gene:76138Re-query CCDS DB by CCDS ID:48565.1Re-query CCDS DB by GeneID:76138See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036576.9 ENSMUSP00000043040.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036576.9Link to Ensembl Protein Viewer:ENSMUSP00000043040.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036576Re-query CCDS DB by Protein ID:ENSMUSP00000043040
Original member Current member NCBI NM_001162956.1 NP_001156428.1 Accepted alive Link to Nucleotide Sequence:NM_001162956.1Link to Protein Sequence:NP_001156428.1Re-query CCDS DB by Nucleotide ID:NM_001162956Re-query CCDS DB by Protein ID:NP_001156428Link to BLAST:NP_001156428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156428.1 680 Q0VF22 680 100% 0 0

Chromosomal Locations for CCDS 48565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 58497970 58498062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58499169 58499213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58499362 58499419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58507521 58507641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58509505 58509632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58513079 58513257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58524138 58524296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58527342 58527461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58528323 58528400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58528905 58529012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58538249 58538410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58540798 58540914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58544917 58545109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58561901 58562077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58573589 58573727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58575689 58575854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGGAGCGCAGGGTGGTCAAGCCACCGGGACAGGATATGGTAGTGGAGCGTCTCAAAAGCCGCTACGGCC
TGGCGGGAAGGTGCCCCGTGGAGGAAAACGACATGACTGGTGTGTGGGCTGCTCTGATGAATCAACAGCA
TGAACTTTCAGATTTTGACCAGACTAAATATAAAAGAAGAATTGTGACCTCCCCAGATGGTTTAGATACT
TACAGCTCTGGAGATAAAGTGGGTTCCTCACCAAGATATTACTCTGATGGAAGGAATCATCCGACTCCAC
CTTTCTGCAGTTCCTTCAAACATTTAAATGTGAACTGCCTAGATGATGAACTGGATTCTTTTCATGATTT
AAAGAAATGGGAAACAGAAAAGGAATTAATGGAAGATGATCATAGAGATGGTGCCTCCAAAATAACAAAG
CAGTCTTTCAAAGAAATGGAAACCGATGCCTTGATGACTAGCATGGCCTCAGGCCTTGAGACTGAATGCT
GCAGTGGTTCCATTGACAGTCCTCTGAAGCAGGCCGTGTACCCAAGACCCAAAGTGTCAAAGAAGCAGGG
TTTGCTTCCACATGAAATAAATCAAATATATGATGAATTATACCATATACATATGAAACTGCAGTATGAA
ACTACAGCACAGAAGAAATTTGCAGAAGAACTTCAAAAACGAGAACAGTTTTTAGCAGAACGAGAACAGC
TGCTTTTCAGCCATGAAACTGCCTTGAGCAAAATTAAAGGTGTGAAAGAAGAGGTTCTGACAAGATTTCA
GATTTTAAAGGAGCAACATGGTACGGAAATTGAACACTTAACTGAAGCTCTTAAGGAAAAGAATAAAGAG
AACAAGAGAATGAGGTCCTCCTTTGATACCCTGAGAGAGCTGAATGATAACTTAAGAAAACAGCTAAATG
AAGTAAGTGAGGAAAACAAGAAGATGGAGATTCAGGCCAAAAGGGTCCAAGCTCGTTTAGATAACTTACA
GAGGAAGTATGAGTTTATGACAGTGCAGAGACTGAAAGGAGACTCCCATGCTGCTCATGAAGTGAAGAGT
TCAAAACAAGAAAAGGCCCCAGCTCCAAAACCCTTCAAGGCAGCACTCAATGGACAAGTGTACGAGCTGC
TCACTGTTTTCATGGATTGGATATCAGACTGCCACCTTAGCAAAGTGGAGCCTGAGGAACCTGGTGTAGA
TGGGGGAAAGCCACCAGCCAAGCCTTCCCAGAGAAGTGACATTCAAGAGAAATGTGTAAAGCTGTTGCCT
ATGATGACAGAGCAGCTCCAGTGGATGCCGCTAGTGAGCGCCAAACTGCACGAGCCGTTCGTAAGGTTTA
TCTATTGGTCTCTGAGGCAGCTGGATGCCAGCGCACGGCAATCAACTATGGCATCAACATTGAGGAGATT
GGGGGAAGACGTATTTAAAGGAGTTACAATGAAAGGAACTCAGGATAATTCTTTAGAGCATTCTGTGGAG
AACAAAGCAAAGACAGCAGTGTTCTTCAAGAGCTCCAGCTTGCCACTGAGATTCTTATCAACCTTAATTG
TCCTCAGAACGGTCACTCAAGCTGACTACCTAGCTCAAGCGTTTGACTCCCTTTGTTTGGACTTGAAGAC
AGATGAAGGAAAAACCTTATTTTTGGAGTACCAAGCCATTCCAGTAATCCTAAAACACCTGAGAATATCC
AGTAAAGGGCTCTTATCCAATGTCATCGACAGCCTGCTTCAGATGACAGTAGAGTCAAAGTCCCTGCAGC
CATTCCTGGAAGCCTGTAGTAACTCTTTGTTTTTTCGTACTTGTTCTGTGCTGCTGCGAACGCCGAAACT
TGATCTTCACATCCTGGAAAAGCTCAGCATCATTCTACAGAAGCTTTCCAAAATCAAGAGTAACAAGAAG
CTCTTTGAAGTTTTTACCATTCACCTAATGCTTCAGGAAATACAAAGGACAACACATCCAGAGCACGCCT
TTCTCTGTATTAATCTGAATTCAACTCTGTTCAACCTGGGTTTGACAAAATGTAACTCCCTGGTCACTAG
TACAAGCCATTAG

Translation (680 aa):
MERRVVKPPGQDMVVERLKSRYGLAGRCPVEENDMTGVWAALMNQQHELSDFDQTKYKRRIVTSPDGLDT
YSSGDKVGSSPRYYSDGRNHPTPPFCSSFKHLNVNCLDDELDSFHDLKKWETEKELMEDDHRDGASKITK
QSFKEMETDALMTSMASGLETECCSGSIDSPLKQAVYPRPKVSKKQGLLPHEINQIYDELYHIHMKLQYE
TTAQKKFAEELQKREQFLAEREQLLFSHETALSKIKGVKEEVLTRFQILKEQHGTEIEHLTEALKEKNKE
NKRMRSSFDTLRELNDNLRKQLNEVSEENKKMEIQAKRVQARLDNLQRKYEFMTVQRLKGDSHAAHEVKS
SKQEKAPAPKPFKAALNGQVYELLTVFMDWISDCHLSKVEPEEPGVDGGKPPAKPSQRSDIQEKCVKLLP
MMTEQLQWMPLVSAKLHEPFVRFIYWSLRQLDASARQSTMASTLRRLGEDVFKGVTMKGTQDNSLEHSVE
NKAKTAVFFKSSSLPLRFLSTLIVLRTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAIPVILKHLRIS
SKGLLSNVIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKK
LFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLVTSTSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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