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Report for CCDS26683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26683.1 Public Mus musculus 13 Spz1 23 108 98 CCDS HistoryNCBI Gene:79401Re-query CCDS DB by CCDS ID:26683.1Re-query CCDS DB by GeneID:79401See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050658.5 ENSMUSP00000054083.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050658.5Link to Ensembl Protein Viewer:ENSMUSP00000054083.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000050658Re-query CCDS DB by Protein ID:ENSMUSP00000054083
Original member Current member NCBI NM_030237.3 NP_084513.3 Accepted alive Link to Nucleotide Sequence:NM_030237.3Link to Protein Sequence:NP_084513.3Re-query CCDS DB by Nucleotide ID:NM_030237Re-query CCDS DB by Protein ID:NP_084513Link to BLAST:NP_084513.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084513.3 378 Q99MY0 378 100% 0 0

Chromosomal Locations for CCDS 26683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 92574830 92575966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGTCGGACACAGACAACTCAGCGGAGATGCCCGCCCGGTGTCCATCTCCTAACCCTGCTCCTGGTGCTA
AGCAAGAACCACCGAACTCTGGGATCACCATTTCCCTCCTTGAAATCGGATCACTCCCCACTGTCTGCTA
CCACTCCTTCCCACCACCAAAGAATAGCATCTGTCCAGTAGAGAAAAGAGGGAGGGTACAGAAATTTAGC
AATCTCTTAAAAGACGTTAAGGATGTTCTCAAAAACATAGCAGGCGTTGAAGAGAAGTCTACAGTTGGGG
AGCCTTTTGATGATGCCTATATTCCTGAAGACCTGTCAGAACTTAACGTCAGAGGTGTTGAGAAGAAAAA
TAAAATACGATTTAAAGATGATCTATTCATTCATTTCGACCCAGAGAGAGAACAGAACACAATGAAGCAG
ATGTTATTGAAAAACCAGAGTGCTAAGAACATGGTACCAAAGTTTGCAAGGGACCTGTGCAATGCAGAAG
AAACGAGAGGCTTCGACGGCATGCTGCTGAGCGTGAAAAGACCGCGGAATGGATCCCTTCACCTTCGCGG
AGAGTACAGAAAACTCAGGAACAACATGGAGCAGTTACTGCAGGAAGCAGATCACTGGAGTAAACAGCAT
AACGAACTCAGCGAACTAATGAGGTCATATCAGGAATGCCAGAACGAAACCCAAGAAACTACTGACAAGG
ATCGAGCCTGTTTGCAAAACCAACCCAACAATGGGCTATCCACCAAGCAGAAGCTGGAGGAGCAGGTGAA
GAAGCTAAGCCATGACACCCACGCGCTGCATTTGATCGCAGCCCTGCTAGAGAATGAATGTCAGGTCCTA
CAACAGAGGGTAGACATCCTCAAGGATTTCCATCTCCACGAAGCGGGACTGGGGCACGAGAAGCCTTTGC
AGATGTCCTGTGAGCAGGACAAGAAATGTCCGAAGTTAGCGGAAGCAGACAAGACGGACGCTTTCAAGCA
TACCACGAGGGCAACGGAAGGCACGATTAGGAAACCGAAGATCCTCAGGAGCCCGGATGTTTGCTTTACT
AAGAAGGCTCGGAATAACCGCTTCAACGCCCGTGTTGCAAAGAAATCTCTGGTGGGGAAAAGGAGAACCG
TTAGCAGCTTTCGGTAG

Translation (378 aa):
MSDTDNSAEMPARCPSPNPAPGAKQEPPNSGITISLLEIGSLPTVCYHSFPPPKNSICPVEKRGRVQKFS
NLLKDVKDVLKNIAGVEEKSTVGEPFDDAYIPEDLSELNVRGVEKKNKIRFKDDLFIHFDPEREQNTMKQ
MLLKNQSAKNMVPKFARDLCNAEETRGFDGMLLSVKRPRNGSLHLRGEYRKLRNNMEQLLQEADHWSKQH
NELSELMRSYQECQNETQETTDKDRACLQNQPNNGLSTKQKLEEQVKKLSHDTHALHLIAALLENECQVL
QQRVDILKDFHLHEAGLGHEKPLQMSCEQDKKCPKLAEADKTDAFKHTTRATEGTIRKPKILRSPDVCFT
KKARNNRFNARVAKKSLVGKRRTVSSFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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