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Report for CCDS27348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27348.1 Public Mus musculus 14 Zic5 23 108 98 CCDS HistoryNCBI Gene:65100Re-query CCDS DB by CCDS ID:27348.1Re-query CCDS DB by GeneID:65100See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039118.6 ENSMUSP00000035754.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039118.6Link to Ensembl Protein Viewer:ENSMUSP00000035754.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039118Re-query CCDS DB by Protein ID:ENSMUSP00000035754
Original member Current member NCBI NM_022987.3 NP_075363.1 Accepted alive Link to Nucleotide Sequence:NM_022987.3Link to Protein Sequence:NP_075363.1Re-query CCDS DB by Nucleotide ID:NM_022987Re-query CCDS DB by Protein ID:NP_075363Link to BLAST:NP_075363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075363.1 622 Q7TQ40 622 99.8392% 0 1

Chromosomal Locations for CCDS 27348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 122459333 122459775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122463892 122465317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGATGGAGCCCCCTTTGAGCAAGAGGAACCCGCCAGCGCTGAGATTAGCGGATTTGGCAACGGCTCAGG
CCCAACAGCTTCAGAATATGACAGGCTTCCCGGTGCTGGTCGGCCCGCCCGCCCACTCCCAACGCCGCGC
GGTCGCCATGCACCTCCACCCGCGGGACCTAGGCACTGACCCCGGCGTAGCCAGCACTGCGCTCGGACCC
GAGCACATGGCACAGGCCAGCGGGCAGGGCCCCTGTCCTCCTTCCCAGGGGCTCCCCGGGCTGTCCCAGG
TTCCCGCACCAGCCGCCCGCTCCGTGGCCTCAGGGACTCACCCAGGCGCCCGCACCCACCCCGACGGCGG
GGGCAGCAGTGGCGCGCAGGCCTCGGCGCCCCCGCCTCCAGCCCCTCCTCTTCCTCCCTCCCAGTCCTCC
TCTCCCCCTCCCCCGCCTCCTCCTCCTCCTGCCCTCTCGGGCTACACTGCCACCAACAGTGGCGGCGGCA
GCAGCAGCGGCAAAGGCCACAGCAGGGACTTCGTCCTCCGGAGGGACCTTTCCGCCACGGCCCCCGCGGC
GGCCATGCACGGGGCCCCGCTCGGAGGGGAGCAGCGGTCCGGCAGCAGCTCCCCCCAGCACCCGACCCCA
CCTCCCCACCCGGCCGGGATGTTCATCTCGGCCAGCGGCACCTACGCGGGCCGGGACGGCGGCGGCTCCG
CGCTCTTTCCCGCGCTGCACGACTCTCCCGGGGCTCCCGGTGGCCACCCGCTAAACGGCCAGATGCGCCT
TGGGCTGGCGGCCGCCGCGGCGGCTGCGGCCGAGCTTTACGGCCGCGCCGAACCACCCTTCGCTCCGCGC
TCAGGGGACGCGCACTATGGGGCGGTGGCGGCCGCCGCGGCCGCCGCCCTGCACGGCTACGGAGCCGTGA
ACTTAAACCTGAACCTGGCTGCGGCAGCGGCGGCCGCAGCGGCCGCGGGGCCCGGGCCCCACCTGCAACA
CCACGCGCCGCCCCCGGCGCCACCGCCGGCGCCCGCGCCGCACCCGCACCACCCCCACCTCCCGGGGGCG
GCCGGGGCCTTCCTGCGCTACATGCGGCAGCCAATCAAGCGGGAGCTCATCTGCAAGTGGCTGGACCCAG
AGGAGCTGGCCGGTCCGCCGGCGTCCGCGGACAGCGGCGTCAAGCCCTGCTCCAAAACTTTCGGCACCAT
GCACGAGCTGGTGAACCACGTCACAGTGGAGCACGTGGGCGGCCCGGAACAGAGCAGCCACGTCTGCTTT
TGGGAGGACTGTCCGCGCGAGGGCAAGCCCTTCAAGGCCAAGTACAAGCTCATCAACCACATCCGCGTGC
ACACCGGCGAGAAGCCCTTCCCCTGCCCGTTCCCGGGCTGCGGCAAGGTCTTCGCGCGCTCCGAGAACCT
CAAGATCCACAAGCGCACTCATACAGGGGAAAAGCCTTTCAAATGTGAATTTGACGGTTGTGATAGGAAG
TTTGCCAATAGCAGCGATCGAAAGAAACACTCCCATGTCCACACCAGCGACAAGCCCTACTACTGTAAGA
TTCGAGGCTGTGATAAATCGTACACCCACCCAAGCTCTCTGAGGAAGCACATGAAGATTCACTGCAAGTC
CCCCCCACCTTCGCCTGGAGCTCTTGGCTACTCGTCGGTGGGGACTCCCGTGGGTGACCCTTTGTCCCCT
GTGCTGGACCCAACCAGGAGTCGATCCAGCACTCTGTCCCCTCAGGTGACCAACCTCAATGAGTGGTATG
TTTGCCAGGCCAGTGGGGCCCCCAGCCATCTCCACACACCTTCCAGCAATGGAACCACCTCTGAGTCTGA
AGATGAGGAAATGTATGGGAACCCTGAAGTCATGCGGACGATACATTAG

Translation (622 aa):
MMEPPLSKRNPPALRLADLATAQAQQLQNMTGFPVLVGPPAHSQRRAVAMHLHPRDLGTDPGVASTALGP
EHMAQASGQGPCPPSQGLPGLSQVPAPAARSVASGTHPGARTHPDGGGSSGAQASAPPPPAPPLPPSQSS
SPPPPPPPPPALSGYTATNSGGGSSSGKGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGSSSPQHPTP
PPHPAGMFISASGTYAGRDGGGSALFPALHDSPGAPGGHPLNGQMRLGLAAAAAAAAELYGRAEPPFAPR
SGDAHYGAVAAAAAAALHGYGAVNLNLNLAAAAAAAAAAGPGPHLQHHAPPPAPPPAPAPHPHHPHLPGA
AGAFLRYMRQPIKRELICKWLDPEELAGPPASADSGVKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCF
WEDCPREGKPFKAKYKLINHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFDGCDRK
FANSSDRKKHSHVHTSDKPYYCKIRGCDKSYTHPSSLRKHMKIHCKSPPPSPGALGYSSVGTPVGDPLSP
VLDPTRSRSSTLSPQVTNLNEWYVCQASGAPSHLHTPSSNGTTSESEDEEMYGNPEVMRTIH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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