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Report for CCDS17291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17291.1 Public Mus musculus 3 Slc7a14 23 108 98 CCDS HistoryNCBI Gene:241919Re-query CCDS DB by CCDS ID:17291.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091259.8 ENSMUSP00000088803.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091259.8Link to Ensembl Protein Viewer:ENSMUSP00000088803.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000091259Re-query CCDS DB by Protein ID:ENSMUSP00000088803
Original member Current member NCBI NM_172861.3 NP_766449.1 Accepted alive Link to Nucleotide Sequence:NM_172861.3Link to Protein Sequence:NP_766449.1Re-query CCDS DB by Nucleotide ID:NM_172861Re-query CCDS DB by Protein ID:NP_766449Link to BLAST:NP_766449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766449.1 771 Q8BXR1 771 100% 0 0

Chromosomal Locations for CCDS 17291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 31209076 31209398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31223462 31224339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31227045 31227253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31230280 31230426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31237369 31237586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31238594 31238830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31257566 31257869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2316 nt):
ATGAGTGGCTTTCTGGCCTCACTGGACCCGAGGCGGGTACAGTGGGGAGCCGCCTGGTATGCAATGCACT
CTCGGATCCTGCGCACCAAACCAGTGGAGTCCATGCTGGAGGGAACTGGGACCACCTCGGCGCATGGTAC
CAAGCTAGCCCAGGTTCTCACCACTGTAGACCTCATCTCTCTTGGAGTCGGCAGCTGTGTGGGCACTGGC
ATGTATGTGGTGTCTGGCCTGGTGGCCAAGGAGATGGCAGGGCCTGGGGTCATCGTGTCCTTCATCATTG
CTGCTGTTGCATCTATATTATCAGGTGTGTGCTATGCAGAGTTTGGAGTCCGAGTCCCCAAGACCACAGG
ATCTGCCTACACCTACAGCTATGTCACCGTTGGGGAGTTCGTGGCATTTTTCATCGGCTGGAACTTGATT
CTGGAGTACCTGATTGGCACGGCAGCTGGTGCCAGTGCTCTGAGCAGTATGTTTGACTCCCTGGCAAACC
ACAGCATCAGCCGCTGGATGGTGGACACCGTGGGAACCCTCAACGGCCTGGGGAAAGGGGAAGAGTCGTA
CCCAGACCTTCTGGCTCTGGTGATTGCCGTCATCGTGACCATCATTGTGGCTCTGGGAGTGAAAAACTCT
GTGGGCTTCAACAACGTCCTCAATGTGCTGAACCTGGCAGTGTGGGTGTTCATCATGATCGCAGGCCTCT
TCTTCATCAATGGCAAATACTGGGCTGAAGGCCAGTTCTTGCCCCACGGATGGTCAGGGGTGCTGCAAGG
AGCAGCCACGTGCTTCTATGCTTTCATTGGCTTTGACATCATTGCCACCACGGGTGAGGAAGCCAAGAAC
CCCAACACATCCATCCCTTACGCCATCACGGCATCCCTGGTCATCTGCCTGACAGCGTATGTGTCTGTGA
GCATGATCTTAACCCTGATGGTACCATATTACGCCATTGACACAGAGTCCCCGCTCATGGAGATGTTTGT
GGCCCATGGCTTCTATGCTGCGAAGTTTGTAGTGGCCATTGGCTCGGTGGCAGGACTGACCGTCAGCTTG
CTGGGCTCCCTGTTCCCCATGCCCAGGGTCATTTACGCCATGGCTGGCGATGGGCTGCTTTTCAGGTTCC
TGGCTCACGTGAGCTCCTACACAGAGACACCAGTGGTAGCTTGCATAGTGTCAGGCTTCCTGGCTGCTCT
CCTCTCTCTGCTGGTGAGCCTGAGGGACCTCATAGAGATGATGTCCATCGGCACGCTCCTCGCCTACACC
CTGGTCTCTGTCTGTGTCTTGCTTCTTCGGTATCAACCTGAGAGCGACATCGATGGTTTTGTCAAGTTCC
TGTCTGAGGAGCACACCAAGAAGAAGGAAGGCATCCTGGCTGACTGTGAGAAGGAAACTTGTTCTCCTGT
GAGTGAAGGGGAGGAATTTTCCAGCCCAGCCACCAACACCTGTGGGGCCAAAAACCTGCCGTCCTTGGGA
GACAATGAGATGCTCATAGGGAAATCAGATAAGTCCGCCTACAACGTCAACCACCCCAACTACGGCACTG
TGGATATGACCACGGGCATAGAAGCCGATGAATCAGAAAACATCTATCTCATCAAGTTGAAGAAGCTGAT
CGGACCCCGTTACTACACCATGAGAATCCGGCTGGGCCTTCCAGGCAAAATGGACCGGCCCACGGCGGCG
ACCGGGCACACGGTGACCATCTGCGTGCTCCTGCTGTTCATCCTCATGTTCATCTTCTGCTCCTTCATCA
TCTTTGGCTCTGAGTACATCTCAGGCCAGAGCTGGTGGGCCATCCTTCTGGTCGTTCTGATGATGCTGCT
GATCAGTGTGCTGGTGTTTGTAATCCTGCAGCAGCCAGAGAACCCCAAGAAGCTGCCGTACATGGCCCCC
TGCCTCCCCTTTGTACCTGCCTTTGCCATGTTGGTGAATATCTATCTCATGCTAAAGCTCTCCACCATCA
CATGGATCCGGTTTGCGGTCTGGTGCTTTGTGGGTATGCTCATTTATTTTGGGTATGGCATCTGGAACAG
CACCTTGGAAATCAGCGCCCGAGAGCAAGCCCTGCATCAGAGCACGTACCAGCGCTACGATGTGGATGAT
CCCTTTTCTGTGGAGGAGGGGTTCTCCTACGCCACCGAGGGCGAGAGCCAGGAGGACTGGGGTGGGCCCG
CCGAGGACAAAGGCTTCTATTACCAACAGATGTCAGATGCGAAGGCAAACAGCCGGACGAGTAGCAAAGC
GAAAAGCAAAAGCAAACACAAACAGAACTCGGAGGCCCTGATTGCAAATGACGAGTTAGATTGCTCTCCG
GAGTAA

Translation (771 aa):
MSGFLASLDPRRVQWGAAWYAMHSRILRTKPVESMLEGTGTTSAHGTKLAQVLTTVDLISLGVGSCVGTG
MYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLI
LEYLIGTAAGASALSSMFDSLANHSISRWMVDTVGTLNGLGKGEESYPDLLALVIAVIVTIIVALGVKNS
VGFNNVLNVLNLAVWVFIMIAGLFFINGKYWAEGQFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKN
PNTSIPYAITASLVICLTAYVSVSMILTLMVPYYAIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSL
LGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYT
LVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKETCSPVSEGEEFSSPATNTCGAKNLPSLG
DNEMLIGKSDKSAYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIRLGLPGKMDRPTAA
TGHTVTICVLLLFILMFIFCSFIIFGSEYISGQSWWAILLVVLMMLLISVLVFVILQQPENPKKLPYMAP
CLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREQALHQSTYQRYDVDD
PFSVEEGFSYATEGESQEDWGGPAEDKGFYYQQMSDAKANSRTSSKAKSKSKHKQNSEALIANDELDCSP
E


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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