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Report for CCDS50522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50522.1 Public Mus musculus 2 Pnpla7 23 108 98 CCDS HistoryNCBI Gene:241274Re-query CCDS DB by CCDS ID:50522.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045295.13 ENSMUSP00000044078.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045295.13Link to Ensembl Protein Viewer:ENSMUSP00000044078.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045295Re-query CCDS DB by Protein ID:ENSMUSP00000044078
Original member Current member NCBI NM_146251.4 NP_666363.3 Accepted alive Link to Nucleotide Sequence:NM_146251.4Link to Protein Sequence:NP_666363.3Re-query CCDS DB by Nucleotide ID:NM_146251Re-query CCDS DB by Protein ID:NP_666363Link to BLAST:NP_666363.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666363.3 1352 A2AJ88-1 1352 100% 0 0

Chromosomal Locations for CCDS 50522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24976284 24976313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24980034 24980108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24980203 24980290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24980713 24980792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24981777 24981868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24982032 24982172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24983490 24983649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24987119 24987199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24995278 24995406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24996157 24996237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24997227 24997350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24998622 24998759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25002615 25002715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25002889 25003032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25010714 25010791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25011506 25011711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25015150 25015281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25016507 25016630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25019404 25019517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25021942 25022011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25029507 25029656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25038837 25038900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25039603 25039771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25040946 25041128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25042089 25042207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25047608 25047764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25049999 25050115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25050258 25050327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25050855 25050971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25051601 25051749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25052032 25052184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25052308 25052418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25052553 25052637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25053395 25053498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25053671 25053793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4059 nt):
ATGCAGAATGAGGAAGATGCCTGCCTTGAGGCTGGCTACTGTTTGGGTACCACCCTGAGCTCCTGGAGGC
TGCATTTCATGGAGGAGCAGTCCCAGTCCACCATGCTGATGGGGATTGGAATTGGCGCCCTCCTTACCCT
AGCCTTCGTTGGTATTACCTTCTTTTTTGTATACAGAAGAGTGAGAAGATTACGACGGGCAGAACCCACT
CCTCAGTACAGGTTCCGGAAGAGAGACAAAGTAATGTTTTATGGCCGGAAGATCATGAGGAAGGTGACCA
CACTCCCCCATACCTTGGTTGGGAATACCTCTGCACCCCGGCAGCGAGTCAGGAAGAGGACCAAAGTGCT
GTCTTTAGCCAAGAGGATTCTGCGCTTTAAGAAAGAGTATCCCACTTTGCAGCCAAAAGAGCCTCCGCCC
TCCCTGCTTGAGGCTGATCTTACAGAGTTTGATGTGAAGAACTCTCATCTGCCATCAGAAGTCTTGTACA
TGTTGAAAAATGTTCGGGTTCTAGGCCACTTTGAGAAGCCACTATTTCTGGAACTTTGCAAACATATGGT
CTTTGTGCAGCTACAAGAAGGGGAGCACGTATTCCAACCTGGGGAGCCTGACATCAGCATCTATGTGGTT
CAGGACGGACGGCTGGAGGTCTGCATCCAAGACGCTGATGGCACCGAAGTGGTGGTCAAAGAGGTCCTGC
CAGGGGACAGTGTCCACAGTCTCCTCAGCATTTTGGATGTGATCACCGGTCACACTGCACCATACAAAAC
AGTTTCTGCCCGTGCCGCTGTCTCGTCCACCGTGCTCTGGCTTCCTGCAGCAGCTTTTCAAGGAGTGTTT
GAGAAATACCCTGAAACTCTGGTCAGGGTTGTGCAGATCATCATGGTCCGGCTGCAGCGGGTGACTTTCC
TGGCTCTGCACAACTACCTGGGGCTGACTACAGAGCTCTTCAACCCTGAGAGCCAGGCCATCCCTCTCTT
GTCAGTAGCAAGTGTGGCTGGACGAGCCAAGAGACAGATGTCATATGGTCCAGAGGAGCAGCTTGAGAGG
TCCCTACGGCCCTCGGAGTTCAGCAGCTCAGATCATGGGAGCAGCTGTGTGACAGTCTCTGGGCCTCTGC
TGAAGAGGAGCTGCTCAGTGCCTCTGCCTTCTAACCATGGGGAGGTGGATGAGCTCAGACAGTCCCAGGG
AAGTGGCTCTAACACTTCTGCCTTCCAAGAAAGCCATGAGGGAGCCACCTCAGACCTGGGGATGGCATAC
AACCGTGCCAGGATTTTGCCACACTCTGATGAGCAACTTGGGAACTCTTTGGCCAGCAAGTCCAAGAAAA
GTGTTGTCGCAGAGACCCCCTCTGCCATCTTCCACTACTCAGAAAATTTCAGGGATGAGACTGGGGCCTG
TGGGAAGACAGATGCTATCTTCAGAGCTGCCACAAAGGACCTCCTTACCCTGATGAAGCTAGATGACCCA
TCCCTGTTGGATGGCCGGGTGGCATTTCTTCATGTTCCTGCAGGCACCTTAGTGTCAAAACAGGGAGATC
AGGATGTCAATATTTTGTTTGTGGTCTCGGGGATGCTGCATGTGTACCAGCAAAAGATTGACAGCTTGGA
GGATACTTGCCTGTTCCTCACACATCCCGGGGAGATGGTGGGTCAGCTGGCGGTGCTCACTGGAGAACCC
CTAATGTTCACCATCAGAGCCAACCGAGACTGCAGCTTTTTGTCCATCTCGAAGGCCCACTTCTATGAGA
TCATGAGGAAACGGCCGGATGTTGTCCTGGGCGTGGCACACACAGTTGTGAAGAGGATGTCATCCTTTGT
ACGGCAGATTGATTTTGCTCTAGACTGGATGGAAGTAGAGGCTGGACGTGCCATATACAGGCAAGGAGAC
AAGTCTGACTGCACATACATCGTTCTCAGTGGCAGGCTGCGTTCTGTCATCCGAAAAGATGATGGGAAAA
AACGCCTGGCAGGGGAATATGGCCGAGGAGACCTTGTTGGTGTGGTGGAGACGCTGACCCACCAGGCCAG
AGCAACCACAGTGCATGCTGTCCGGGACTCAGAACTGGCTAAGCTGCCAGCAGGAGCTCTGACGTCTATC
AAGCGCAGGTACCCACAGGTTGTAACGCGACTGATTCATCTCTTGGGCGAGAAGATCTTAGGCAGTCTCC
AGCAGGGATCTGCAACAGGTCACCAGCTTGGATTTAACACAGCAAGCAGCAAATGGGACTTGGGGAACCC
GCCTGGCAATCTGTCCACAGTGGCAGCACTGCCTGCTTCTGAGGATGTGCCCCTAACCGCCTTTGCTCTG
GAGCTCCAACATGCCCTCAGTGCCATCGGTCCTGTCCTGCTGCTGACCAGTGACAACATCAAACAACGCC
TGGGTTCCGCTGCTCTAGACAGCATCCATGAGTACCGGCTCTCCAGTTGGCTGGGCCAGCAGGAGGACAT
CCACCGGATTGTGCTGTATCAGGCAGACGGCACACTCACACCGTGGACCCAGCGCTGCATCCGGCAGGCT
GACTGCATCCTCATCGTGGGCTTGGGTGAGCAAGAGCCAGCAGTAGGTGAGCTGGAGCAGATGTTGGAGA
GCACAGCTGTGCGTGCCCAGAAGCAGCTAATCTTGCTGCACAAAGAGGACGGTCCAGTGCCTTCCCGCAC
AGTGGAGTGGCTCAACATGCGAAGTTGGTGTTCTGGCCATTTGCACCTCTGCTGCCCACGCCGTGTCTTC
TCCAAGAGAAGCTTGCCCAAGCTGGTCGAGATGTACACACGTGTTTTCCAACGACCACCAGACCGTCATT
CTGATTTTTCCCGCCTGGCACGGATGCTGACAGGCAATGCCATTGCCTTGGTGCTTGGAGGGGGTGGAGC
TAGAGGGTGTGCCCAGGTGGGCATCCTCAGGGCACTAGCAGAGTGTGGCGTCCCCGTGGACATAATCGGA
GGCACATCCATCGGGGCTTTCATGGGTGCTCTGTTTGCTGAGGAGCGGAGCTACAGCCAAACACGGATCC
GGGCCAAGCAGTGGGCAGAGGGTATGACATCAATGATGAAGACTATACTGGACCTGACCTACCCAATCAC
ATCCATGTTCTCTGGCACTGGCTTCAATAGCAGCATCAGCAACATCTTCAAAGACCGGCAGATTGAGGAC
CTGTGGCTCCCCTACTTTGCCATCACCACCGACATCACGGCCTCTGCCATGCGGGTTCACACAGATGGCT
CTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTATATGCCCCCACTCTGCGACCCCAAGGA
TGGACACCTGCTGATGGATGGTGGTTACATCAACAACCTCCCAGCGGATGTGGCAAGATCCATGGGGGCA
AAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACAGACCTCACCAACTATGGCGATGCCTTGT
CTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCTACAAAAGTCAAGGTGTTGAACATGGCAGA
GATTCAGACTCGACTGGCCTATGTGTGCTGCGTCCGGCAGCTGGAGATGGTGAAGAACAGCGACTACTGT
GAGTACCTGAGGCCTCCCATCGACAGTTACCGCACCCTGGACTTCGGCAAATTTGATGAGATCTGTGAAG
TTGGGTATCAACATGGGCGGACAGTGTTTGACATCTGGGTCCGGAGTGGTGTCCTAGAGAAGATGTTGCA
GGACCAGCAGGGGACAAGCAAGAGGAAGGACTGTGGGGTGTTCACCTGCCCCAATTCCTCCTTCACGGAC
CTTGCTGAGATTGTGTCACGGATTGAGCCGGCCAAGGTGGCTGCAGTGGATGATGAGTCTGACTATCAGA
CCGAGTATGAGGAGGAACTGCCAGCCATCCCCAAGGAAACGTATGCTGACTTCCAGAGCACTGGGATTGA
GCTAGACTCTGACTCGGAATATGAGCCTTCGATGTTGCAAGGACCCCCCAGCTTGACTTCCCCAGAACAG
TCCCAGGACTCCTTCCCTTGGCTCCCTAATCAAGATGACCAGGGGCCAAGACTGGAACATCCTTCCTGA

Translation (1352 aa):
MQNEEDACLEAGYCLGTTLSSWRLHFMEEQSQSTMLMGIGIGALLTLAFVGITFFFVYRRVRRLRRAEPT
PQYRFRKRDKVMFYGRKIMRKVTTLPHTLVGNTSAPRQRVRKRTKVLSLAKRILRFKKEYPTLQPKEPPP
SLLEADLTEFDVKNSHLPSEVLYMLKNVRVLGHFEKPLFLELCKHMVFVQLQEGEHVFQPGEPDISIYVV
QDGRLEVCIQDADGTEVVVKEVLPGDSVHSLLSILDVITGHTAPYKTVSARAAVSSTVLWLPAAAFQGVF
EKYPETLVRVVQIIMVRLQRVTFLALHNYLGLTTELFNPESQAIPLLSVASVAGRAKRQMSYGPEEQLER
SLRPSEFSSSDHGSSCVTVSGPLLKRSCSVPLPSNHGEVDELRQSQGSGSNTSAFQESHEGATSDLGMAY
NRARILPHSDEQLGNSLASKSKKSVVAETPSAIFHYSENFRDETGACGKTDAIFRAATKDLLTLMKLDDP
SLLDGRVAFLHVPAGTLVSKQGDQDVNILFVVSGMLHVYQQKIDSLEDTCLFLTHPGEMVGQLAVLTGEP
LMFTIRANRDCSFLSISKAHFYEIMRKRPDVVLGVAHTVVKRMSSFVRQIDFALDWMEVEAGRAIYRQGD
KSDCTYIVLSGRLRSVIRKDDGKKRLAGEYGRGDLVGVVETLTHQARATTVHAVRDSELAKLPAGALTSI
KRRYPQVVTRLIHLLGEKILGSLQQGSATGHQLGFNTASSKWDLGNPPGNLSTVAALPASEDVPLTAFAL
ELQHALSAIGPVLLLTSDNIKQRLGSAALDSIHEYRLSSWLGQQEDIHRIVLYQADGTLTPWTQRCIRQA
DCILIVGLGEQEPAVGELEQMLESTAVRAQKQLILLHKEDGPVPSRTVEWLNMRSWCSGHLHLCCPRRVF
SKRSLPKLVEMYTRVFQRPPDRHSDFSRLARMLTGNAIALVLGGGGARGCAQVGILRALAECGVPVDIIG
GTSIGAFMGALFAEERSYSQTRIRAKQWAEGMTSMMKTILDLTYPITSMFSGTGFNSSISNIFKDRQIED
LWLPYFAITTDITASAMRVHTDGSLWRYVRASMSLSGYMPPLCDPKDGHLLMDGGYINNLPADVARSMGA
KVVIAIDVGSRDETDLTNYGDALSGWWLLWKRWNPLATKVKVLNMAEIQTRLAYVCCVRQLEMVKNSDYC
EYLRPPIDSYRTLDFGKFDEICEVGYQHGRTVFDIWVRSGVLEKMLQDQQGTSKRKDCGVFTCPNSSFTD
LAEIVSRIEPAKVAAVDDESDYQTEYEEELPAIPKETYADFQSTGIELDSDSEYEPSMLQGPPSLTSPEQ
SQDSFPWLPNQDDQGPRLEHPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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