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Report for CCDS37986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37986.1 Public Mus musculus 19 Tll2 23 108 98 CCDS HistoryNCBI Gene:24087Re-query CCDS DB by CCDS ID:37986.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025986.14 ENSMUSP00000025986.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025986.14Link to Ensembl Protein Viewer:ENSMUSP00000025986.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025986Re-query CCDS DB by Protein ID:ENSMUSP00000025986
Original member Current member NCBI NM_011904.4 NP_036034.1 Accepted alive Link to Nucleotide Sequence:NM_011904.4Link to Protein Sequence:NP_036034.1Re-query CCDS DB by Nucleotide ID:NM_011904Re-query CCDS DB by Protein ID:NP_036034Link to BLAST:NP_036034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036034.1 1012 Q9WVM6 1012 100% 0 0

Chromosomal Locations for CCDS 37986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41084182 41084316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41086220 41086470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41088673 41088886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41091417 41091544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41092722 41092847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41095853 41096033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41097784 41097944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41098619 41098744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41103680 41103875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41104906 41105051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41105652 41105768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41112987 41113089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41117235 41117350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41120171 41120295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41128461 41128566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41130480 41130658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41135946 41136063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41140109 41140264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41159547 41159621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41183201 41183311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41206477 41206645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3039 nt):
ATGCCCCTTGCGACCACTCTTGGCACCCTGGTGCTACTGTTGCTGCTACCGCTGCCCCGCGGTGCTGAAG
TGACTGGGGACCATTCGAATGTCGCCTTGGACTACGGAGCCTTGGAAGGCGAGGAGGGCACGGAGCAGCA
GCTGCATTACCACGACCCCTGCAAAGCTGCTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTC
AAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG
GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAG
AAAGGATGGCAAGGATGCCACCACATTTCTGCCTAACCCTGGGACCTCAAACACCACCGCTAAGACCTTC
TCTGCTCGAGTTCGAAGAGCTACAACCTCAAGGACAGAGCGGATTTGGCCTGGAGGGGTCATTCCTTATG
TCATTGGAGGAAACTTTACTGGTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCA
CACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGGT
TGTTGTTCCTACGTGGGACGCCGAGGAGGTGGCCCGCAGGCCATATCCATCGGGAAAAACTGTGACAAGT
TCGGCATTGTGGCTCACGAGCTGGGCCATGTGGTTGGGTTCTGGCATGAACACACTCGGCCAGACCGAGA
CCAACATGTCACCATCATCAGAGAAAACATCCAGCCAGGTCAGGAGTATAATTTCTTAAAAATGGAAGCC
GGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCT
CAAGAGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCA
ACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAGCATGTGGGGAG
ACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACT
GCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAGATCATCCTAAATTTCACCTCCATGGATTTGTTTAA
GAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGGGG
AGGTTCTGTGGCGATAAGATACCTGAGTCCCTTGTCTCCTCGGACAGCCGGCTCTGGGTGGAATTCCGTA
GCAGCAGCAGCAGCCTGGGCAAAGGCTTCTTTGCTGTATATGAAGCCATGTGTGGGGGAGACATAACCAA
AGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGG
ATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAGATCGAAAGGCATGACAGTT
GTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGG
CTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCC
ATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGAGGTGGATGAGTGCTCCTGGCCAGACCATGGTG
GATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGC
TGCCGACAAGAAGACATGTGAAGTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGC
CCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACC
GCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGACGTCTGTAAGTATGACTTCGTAGAGGT
GCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATC
ACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGG
CTCACTTCTTCTCAGACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACAC
GTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAG
GCTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACC
CCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATTACATTCAGTGA
GTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTG
GCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTAT
TCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGAGTGTGG
GGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTAC
CCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGA
CCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTC
GGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGCCATTAGAGGAAATCTACTCCGCCGGAGACTCGCTA
ATGATCCGCTTCCACACGGACGACACCATCAACAAGAAAGGCTTTCACGCCCGGTACACTAGCACCAAGT
TCCAAGACGCCTTGCACATGAGGAAGTAG

Translation (1012 aa):
MPLATTLGTLVLLLLLPLPRGAEVTGDHSNVALDYGALEGEEGTEQQLHYHDPCKAAVFWGDIALDEDDL
KLFHIDKAEDWTKPSIDKPGHDTGGLEETSARWPNDTASNASIQAPRKDGKDATTFLPNPGTSNTTAKTF
SARVRRATTSRTERIWPGGVIPYVIGGNFTGTQRAIFKQAMRHWEKHTCVTFVERTDEESFIVFSYRTCG
CCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEA
GEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRRDDNGVRPTIGQRVRLSQGDIAQARKLYKCPACGE
TLQDTTGNFSAPGFPNGYPSYSHCVWRISVTPGEKIILNFTSMDLFKSRLCWYDYVEIRDGYWRKAPLLG
RFCGDKIPESLVSSDSRLWVEFRSSSSSLGKGFFAVYEAMCGGDITKDAGQIQSPNYPDDYRPSKECVWR
ITVPDGFHVGLTFQSFEIERHDSCAYDYLEIRDGPTEDSTLIGHFCGYEKPEAVKSSANRLWVKFVSDGS
INKAGFAANFFKEVDECSWPDHGGCEQRCVNTLGSYTCACDPGYELAADKKTCEVACGGFITKLNGTITS
PGWPKEYPTNKNCVWQVVAPVQYRISLQFEAFELEGNDVCKYDFVEVRSGLSPDAKLHGKFCGSETPEVI
TSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNGGCQQECVNTFGSYLCRCRNGYRLHENGHDCKE
AGCAYKISSAEGTLMSPNWPDKYPSRKECTWNISSTAGHRVKITFSEFEIEQHQECAYDHLELYDGTDSL
APILGRFCGSKKPDPVVATGSSLFLRFYSDASVQRKGFQAVHSTECGGRLKAEVQTKELYSHAQFGDNNY
PSQARCDWVIVAEDGYGVELIFRTFEVEEEADCGYDFMEAYDGYDSSAPRLGRFCGSGPLEEIYSAGDSL
MIRFHTDDTINKKGFHARYTSTKFQDALHMRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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