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Report for CCDS15401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15401.1 Public Mus musculus 1 Brinp2 23 108 98 CCDS HistoryNCBI Gene:240843Re-query CCDS DB by CCDS ID:15401.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004133.10 ENSMUSP00000004133.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004133.10Link to Ensembl Protein Viewer:ENSMUSP00000004133.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004133Re-query CCDS DB by Protein ID:ENSMUSP00000004133
Original member Current member NCBI NM_207583.2 NP_997466.2 Accepted alive Link to Nucleotide Sequence:NM_207583.2Link to Protein Sequence:NP_997466.2Re-query CCDS DB by Nucleotide ID:NM_207583Re-query CCDS DB by Protein ID:NP_997466Link to BLAST:NP_997466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997466.2 783 Q6DFY8 783 100% 0 0

Chromosomal Locations for CCDS 15401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158246198 158247314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158249289 158249511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158251240 158251476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158254974 158255079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158266462 158266670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158267830 158268020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158295426 158295694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGAGGTGGCCGTGCAGCTCTTGGTTTAGAGGGCTTTGGCCGGAGGCCGCCCCATGGGCAGTCCTGCTGG
CGCTAGGCGTACCCGGGTGGGTGCTGGCTGTCTCGGCCACGGTGGCCGCTGTGGTCCCGGAACAGCATGT
CTCCTCAGCTGGCCAGGCTCCCCTGGACTGGCTGCTCACAGACCGAGGCCCCTTCCACCGAGCCCAGGAG
TATGCTGATTTCATGGAGCGTTACCGCCAGGGGTTCACCACCAGATACAGGATCTACAGGGAGTTTGCCC
GATGGAAAGTGAACAACTTGGCCCTAGAAAGGAGAGATTTCTTCAGTTTGCCCCTGCCTCTCGCCCCAGA
GTTTGTCCGCAATATCCGCCTCCTTGGAAGGAGACCCAATCTGCAACAGGTTACTGAAAACCTCATCAAA
AAGTACGGCACTCATTTCTTACTTTCTGCTACTCTTGGAGGAGAAGAGTCTCTGACCATTTTTGTGGACA
AGAGGAAACTAAGCAGAAAGTCAGAAACAACAGGAGGTATCCCTGTAGTTGGGGGCACTGGGAACAGCTC
CGCTGTGTCTCTGGAAACCCTGCACCAGCTGGCTGCCTCCTACTTCATTGACAGAGAGAGCACACTGCGC
AGACTTCACCATATCCAAATAGCCACAGGGGCCATAAAGGTCACAGAGACCAGGACTGGTCCACTGGGCT
GCAGCAACTATGACAACCTGGACTCAGTCAGCTCTGTCCTGGTTCAGAGTCCAGAGAACAAGGTGCAGTT
ACTGGGCCTGCAGGTGCTGCTCCCTGAACACCTGCGTGAGCGGTTCGTGGCTGCAGCACTCAGCTACATC
ACATGCAGTTCTGAGGGCGAGCTGGTCTGCAGGGAGAATGACTGCTGGTGCAAGTGCAGCCCCACATTCC
CGGAATGCAACTGTCCTGATGCTGACATTCAGGCTATGGAAGACAGCTTGCTGCAGATCCAAGACTCCTG
GGCCACTCACAACAGGCAGTTTGAAGAGTCCGAAGAATTCCAGACCCTGCTGAAGAGGCTCCCCAGTGAC
CGGTTCCTGAACTCCACAGCCATCTCCCAGTACTGGACCATGGACTCTAACCTCCAGCACCGTTATCAGC
AGCTGGGAGCCAGCTTGAAAGTCCTGTTAAAGAAGATGCACCGGATCGTCCGCCGCCTCTTCAATCTCTG
CAAGCGCTGTCATCGGCAGCCTCGCTTCCGCCTGCCCAAGGAGAGATCCTTGTCTTTCTGGTGGAACCGA
ATCCAGTCCCTTCTCTACTGTGGAGAAAGCACCTTCCCTGGGACGTTCCTGGAACAGAGCCACAGCTGCA
CCTGCCCCTATGACCAATCTTCCTGCCAGGGCCCCATCCCATGTGCCTTGGGGGAAGGGCCTGCATGTGC
TCACTGTGCTTCAGACAATTCCACGCGCTGTGGGAGTTGTAACCCTGGTTATGTGCTAGCCCAGGGACTG
TGTCGGCCAGAGGTAGCTGAGTCCCTGGAGAACTTCCTTGGGCTGGAGACAGACCTGCAGGACCTTGAGC
TGAAGTACCTGCTGCAGAAGCGAGATAGCCGCATTGAGGTACACTCCATCTTTATCAGCAATGACATGCG
CCTGGGCAGCTGGTTTGATCCTTCCTGGAGGAAGCGGATGCTCCTGACCTTGAAGAGCAACAAGTACAAG
CCCGGGCTGGTGCATGTGATGTTGGCCTTGTCCTTGCAGATCTGCCTCACTAAGAACAGCACCCTGGAAC
CGGTCATGGCCATCTACGTGAACCCCTTTGGGGGCAGCCACTCAGAGAGCTGGTTCATGCCTGTTAATGA
GGGCAACTTCCCAGACTGGGAAAGGACTAATGTAGACGCAGCTGCCCAGTGCCAAAACTGGACTATTACT
TTGGGGAACAGGTGGAAGACTTTTTTTGAGACAGTCCATGTTTACCTACGGAGCCGAATCAAGTCCCTGG
ATGACAGCTCCAACGAGACAATCTACTATGAGCCCCTGGAGATGACTGATCCCTCCAAGAATTTGGGCTA
CATGAAAATCAACACCTTGCAGGTCTTTGGCTACAGCCTGCCCTTTGACCCGGATGCTATCCGAGATTTA
ATTCTCCAGCTGGACTACCCGTATACTCAAGGTTCCCAGGACTCTGCACTCTTACAACTCATTGAGCTTA
GAGACCGGGTGAACCAACTCTCTCCCCCTGGCAAAGTCCGGCTCGACCTTTTCTCTTGCTTGCTCCGGCA
TAGGCTCAAGCTGGCCAACAATGAGGTGGGCAGGATCCAGTCCTCCCTGAGAGCTTTTAATTCCAAGCTG
CCAAATCCTGTGGAGTATGAGACGGGCAAACTCTGTAGCTAA

Translation (783 aa):
MRWPCSSWFRGLWPEAAPWAVLLALGVPGWVLAVSATVAAVVPEQHVSSAGQAPLDWLLTDRGPFHRAQE
YADFMERYRQGFTTRYRIYREFARWKVNNLALERRDFFSLPLPLAPEFVRNIRLLGRRPNLQQVTENLIK
KYGTHFLLSATLGGEESLTIFVDKRKLSRKSETTGGIPVVGGTGNSSAVSLETLHQLAASYFIDRESTLR
RLHHIQIATGAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKVQLLGLQVLLPEHLRERFVAAALSYI
TCSSEGELVCRENDCWCKCSPTFPECNCPDADIQAMEDSLLQIQDSWATHNRQFEESEEFQTLLKRLPSD
RFLNSTAISQYWTMDSNLQHRYQQLGASLKVLLKKMHRIVRRLFNLCKRCHRQPRFRLPKERSLSFWWNR
IQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEGPACAHCASDNSTRCGSCNPGYVLAQGL
CRPEVAESLENFLGLETDLQDLELKYLLQKRDSRIEVHSIFISNDMRLGSWFDPSWRKRMLLTLKSNKYK
PGLVHVMLALSLQICLTKNSTLEPVMAIYVNPFGGSHSESWFMPVNEGNFPDWERTNVDAAAQCQNWTIT
LGNRWKTFFETVHVYLRSRIKSLDDSSNETIYYEPLEMTDPSKNLGYMKINTLQVFGYSLPFDPDAIRDL
ILQLDYPYTQGSQDSALLQLIELRDRVNQLSPPGKVRLDLFSCLLRHRLKLANNEVGRIQSSLRAFNSKL
PNPVEYETGKLCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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