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Report for CCDS29287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29287.1 Public Mus musculus 18 Pcyox1l 23 108 98 CCDS HistoryNCBI Gene:240334Re-query CCDS DB by CCDS ID:29287.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025472.6 ENSMUSP00000025472.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025472.6Link to Ensembl Protein Viewer:ENSMUSP00000025472.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000025472Re-query CCDS DB by Protein ID:ENSMUSP00000025472
Original member NCBI NM_172832.4 NP_766420.1 Updated not alive Link to Nucleotide Sequence:NM_172832.4Link to Protein Sequence:NP_766420.1Re-query CCDS DB by Nucleotide ID:NM_172832Re-query CCDS DB by Protein ID:NP_766420
Current member NCBI NM_172832.5 NP_766420.1 Accepted alive Link to Nucleotide Sequence:NM_172832.5Link to Protein Sequence:NP_766420.1Re-query CCDS DB by Nucleotide ID:NM_172832Re-query CCDS DB by Protein ID:NP_766420Link to BLAST:NP_766420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766420.1 495 Q8C7K6 495 100% 0 0

Chromosomal Locations for CCDS 29287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61697312 61697976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61698364 61698504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61699293 61699504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61702196 61702370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61703512 61703718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61707494 61707581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGCCCGCGCTGCCCCGCTGCTCGCCGTGCTGGCCACAGTCCTCACCACCGCCGCTGCAGGCGGAGACG
CACCGCCGGGGAAAATCGCTGTTATCGGAGCTGGGATCGGGGGCTCTGCTGTGGCCCATTTCCTTCAGCA
ACACTTCGGACCCCGAGTGCAAATTGTCGTCTATGAGAAAGGGACTGTGGGTGGCCGCCTGGCCACCATC
TCCGTCAACAAGCAGAACTACGAGAGCGGGGCGGCCTCCTTTCACTCTCTGAGCCTCCACATGCAGGACT
TCGTCAAGCTGCTGGGACTGAGACAGCGGCGCGAGGTGGTGGGCAGAAGCGCCATCTTTGGCGGCGAACA
TTTCGTGCTGGAGGAAACCGACTGGTACCTGCTGAATCTCTTCCGCCTCTGGTGGTACTACGGCATCAGC
TTCCTGAGGCTGCAGATGTGGGTAGAGGAAGTCATGGAGAAGTTCATGAGGATCTACAAGTACCAGGCTC
ACGGCTATGCCTTCTCGGGGGTAGAAGAGCTACTCTACTCACTGGGGGAAGCCACCTTTGTCAACATGAC
CCAGCGGTCCGTGGCCGAGTCCCTGCTCCAGGTGGGCGTCACACAGCGCTTTATTGATGATGTCGTCTCT
GCGGTCCTACGGGCCAGCTATGGCCAGTCGGCATCAATGCCCGCCTTTGCTGGAGCCATGTCCCTAGCTG
GGGCTCAGGGCAACCTGTGGTCCGTGGAAGGGGGCAACAAGCTGGTTTGTTCTGGTTTGCTGAAGCTCGC
CAAGGCCACCGTGATCCACGCCACGGTGACCTCTGTGACCCTGCACAGTACAGAAGGGAAAGCCCTGTAC
CAAGTGGCGTACGAGAGTGACAAGGGCAACAGCTCTGACTTCTACGACATCGTGGTCATCGCCACGCCCC
TGCACCTGGACAACAGCAGCAACAACAACATCACCTTTGAAGGCTTTACTCCGCCCATTGAGGACATTCA
GGGCTCCTTCCAGCCCACCGTGGTCTCCCTGGTCCATGGCTACCTCAACTCTTCCTACTTCGGTTTCCCG
GACCCTAAGCTTTTCCCCTTCGCCAACATCCTCACCACGGACTTCCCGAGCTTCTTCTGCACTCTGGACA
ACATCTGTCCCGTCAACATCTCGGCCAGCTTCCGGCGGAAGCAACCCCAGGAGGCCGCCGTGTGGCGAGT
GCAGTCCCCGAAGCCCCTCTTCCGCACGGAGCTGAAGACCCTCTTCCGTTCCTATTACTCAGTCCAGACG
GCGGAGTGGCAGGCCCACCCCCTCTACGGCTCCCGCCGCACCCTCCCGAGGTTCGCCCTGCACGATCAGC
TCTTCTACCTCAATGCCTTGGAGTGGGCGGCCAGCTCCGTGGAGGTGACGGCTGTAGCTGCTAAGAATGT
GGCTCTGTTGGCTTATAACCGCTGGTACCAGGACCTGGATAAGATTGACCAGAAGGACCTAATCCATAAG
GTCAAGACTGAACTGTGA

Translation (495 aa):
MARAAPLLAVLATVLTTAAAGGDAPPGKIAVIGAGIGGSAVAHFLQQHFGPRVQIVVYEKGTVGGRLATI
SVNKQNYESGAASFHSLSLHMQDFVKLLGLRQRREVVGRSAIFGGEHFVLEETDWYLLNLFRLWWYYGIS
FLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGEATFVNMTQRSVAESLLQVGVTQRFIDDVVS
AVLRASYGQSASMPAFAGAMSLAGAQGNLWSVEGGNKLVCSGLLKLAKATVIHATVTSVTLHSTEGKALY
QVAYESDKGNSSDFYDIVVIATPLHLDNSSNNNITFEGFTPPIEDIQGSFQPTVVSLVHGYLNSSYFGFP
DPKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLFRTELKTLFRSYYSVQT
AEWQAHPLYGSRRTLPRFALHDQLFYLNALEWAASSVEVTAVAAKNVALLAYNRWYQDLDKIDQKDLIHK
VKTEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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