NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26193.1 Public Mus musculus 12 Siva1 23 108 98 CCDS HistoryNCBI Gene:30954Re-query CCDS DB by CCDS ID:26193.1Re-query CCDS DB by GeneID:30954See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021728.11 ENSMUSP00000021728.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021728.11Link to Ensembl Protein Viewer:ENSMUSP00000021728.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021728Re-query CCDS DB by Protein ID:ENSMUSP00000021728
Original member Current member NCBI NM_013929.2 NP_038957.2 Accepted alive Link to Nucleotide Sequence:NM_013929.2Link to Protein Sequence:NP_038957.2Re-query CCDS DB by Nucleotide ID:NM_013929Re-query CCDS DB by Protein ID:NP_038957Link to BLAST:NP_038957.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038957.2 175 O54926-1 175 100% 0 0

Chromosomal Locations for CCDS 26193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112644967 112645084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112646838 112647032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112647825 112647981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112648980 112649037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCCCAAGCGGAGCTGCCCGTTCGCAGACGCAGCCCCGCTCCAACTCAAAGTCCACGTGGGCCTGAAAG
AGCTGAGCCACGGTGTGTTCGCCGAGCGCTACTCACGCGAGGTCTTCGAAAGAACCAAGCAGCTCCTTTT
CCAAGGGGCTCGGGCCTATAGAGATCACATATCGAGCGAAGATTGTTCCGTGAACCACCTGCAGGAGTCA
CTGAAGTCTGGTGTGGTAGGAGCCCCTCAACCTGCGAGGGGACAGATGTTGATTGGACCTGATGGCCGAC
TGACACGGTGCCAAGCTCAGGCCTCAGAAGGTGGCCTTCCCAGGACAGCGCCCATCGCTTGTTCATCGTG
CATGAGATCTGTGGATGGGAAGGCGGTCTGCAGCCAGTGCGAGCGGGCCCTGTGTGGGCAGTGTGTATAC
ACCTGCTGGGGCTGCGGTGCTTTGGCCTGTGTGCTGTGTGGCCTTGCAGACTATGCCGACGATGGTGAGA
AGACACTGTGCACCAGCTGTGCTATGTTTGAAGCCTGA

Translation (175 aa):
MPKRSCPFADAAPLQLKVHVGLKELSHGVFAERYSREVFERTKQLLFQGARAYRDHISSEDCSVNHLQES
LKSGVVGAPQPARGQMLIGPDGRLTRCQAQASEGGLPRTAPIACSSCMRSVDGKAVCSQCERALCGQCVY
TCWGCGALACVLCGLADYADDGEKTLCTSCAMFEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH