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Report for CCDS50105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50105.1 Public Mus musculus 17 H2-M5 23 108 98 CCDS HistoryNCBI Gene:240095Re-query CCDS DB by CCDS ID:50105.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169189.7 ENSMUSP00000131365.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169189.7Link to Ensembl Protein Viewer:ENSMUSP00000131365.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169189Re-query CCDS DB by Protein ID:ENSMUSP00000131365
Original member Current member NCBI NM_001115075.2 NP_001108547.1 Accepted alive Link to Nucleotide Sequence:NM_001115075.2Link to Protein Sequence:NP_001108547.1Re-query CCDS DB by Nucleotide ID:NM_001115075Re-query CCDS DB by Protein ID:NP_001108547Link to BLAST:NP_001108547.1

Chromosomal Locations for CCDS 50105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36986978 36987018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36987416 36987523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36987655 36987930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36988505 36988780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36988935 36989204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36989429 36989504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGAGAAGCCCTGCGCTCTCTACCCTCCTATCCTTGCTGCTCACCGGAGCTTTGGCCTTGACCCTGGTTC
GCGCAGGCATCCATTCCTTGCAGTTTTTTGCCACCACCATGACCCAGCCTGGTTTGAGGGAGCATTCCTT
CATCTTTGTCGTCTTCGTGGACGACACACAGTTCCTGTGCTACAACAATAAGGGGAAAAATCAGAGAATG
GAGCCACGCGCTCTGTGGGTGAAGCAGATGGGGCCAGAGTATTGGGAACAGCAGACCAGGACTGTCAAGG
TCATTGAGAAGATTGCCCTAGTGAATTTGCAGGAGGCCATGGACATCTACAACCACAGCAAGGATGGCTC
TCACGTCTTTCAGTGTGTGTATGGCTGCGAAGTGGGGCCAGATGGACTCTTCCTCCGTGGGCATGAGAAG
CACGCATACGACGGCCGCGATTACCTCACCCTAAGCCCGGACCTGCACTCCTGGGTCGCAGGCGACACAG
CTGCGCAGATCACGCTGCGCAGGTGGGAGAAGTCTGGTGTCTCTGAGCAAAGGCAATCCTTCTTGAAGGG
CGAGTGTGTGGAGTCGCTCCGCACATACCTGGAGATAGGGAAGGAGACTCTGCTAAGAACAGATCCTCCC
AAGGCACATGTGACCCATCACCCCAGACCTGAAGGTGAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCT
ACCCTGCTAACATCATCCTGACCTGGCAGTGGGATGAGGAAGACCTGACTCAGGACATGGACCTCATTGA
GACCAGACCTGCAGGGGATGGGACCTTCCAGAAGTGGGCATCTGTGGTGGTACCTTCTGGAGAGGAACAG
AGATACACATGTCATGTGCAACATGAGGGGCTAACCCAGCCCCTTGTTCTAAAATGGGACCCTTCTAAGC
ACACCATTCCCATCATGGGAATCACTGTTGGCCTGCTTCTCTTTGGAGTTGTGTTTACTGGAGCTGTGGT
TGCCATAGTGATGAGGAAGAGGAAAGGTTTTCAGATAATAATTCTAAAAACATTCCTGAAGGGCTGA

Translation (348 aa):
MRSPALSTLLSLLLTGALALTLVRAGIHSLQFFATTMTQPGLREHSFIFVVFVDDTQFLCYNNKGKNQRM
EPRALWVKQMGPEYWEQQTRTVKVIEKIALVNLQEAMDIYNHSKDGSHVFQCVYGCEVGPDGLFLRGHEK
HAYDGRDYLTLSPDLHSWVAGDTAAQITLRRWEKSGVSEQRQSFLKGECVESLRTYLEIGKETLLRTDPP
KAHVTHHPRPEGEVTLRCWALGFYPANIILTWQWDEEDLTQDMDLIETRPAGDGTFQKWASVVVPSGEEQ
RYTCHVQHEGLTQPLVLKWDPSKHTIPIMGITVGLLLFGVVFTGAVVAIVMRKRKGFQIIILKTFLKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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