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Report for CCDS30507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30507.1 Public Mus musculus X Rai2 23 108 98 CCDS HistoryNCBI Gene:24004Re-query CCDS DB by CCDS ID:30507.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061514.7 ENSMUSP00000051618.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061514.7Link to Ensembl Protein Viewer:ENSMUSP00000051618.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061514Re-query CCDS DB by Protein ID:ENSMUSP00000051618
Original member Current member EBI ENSMUST00000112338.1 ENSMUSP00000107957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112338.1Link to Ensembl Protein Viewer:ENSMUSP00000107957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112338Re-query CCDS DB by Protein ID:ENSMUSP00000107957
Original member Current member NCBI NM_001103367.1 NP_001096837.1 Accepted alive Link to Nucleotide Sequence:NM_001103367.1Link to Protein Sequence:NP_001096837.1Re-query CCDS DB by Nucleotide ID:NM_001103367Re-query CCDS DB by Protein ID:NP_001096837Link to BLAST:NP_001096837.1
Original member Current member NCBI NM_198409.3 NP_940801.2 Accepted alive Link to Nucleotide Sequence:NM_198409.3Link to Protein Sequence:NP_940801.2Re-query CCDS DB by Nucleotide ID:NM_198409Re-query CCDS DB by Protein ID:NP_940801Link to BLAST:NP_940801.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096837.1 529 Q9QVY8 529 100% 0 0
NP_940801.2 529 Q9QVY8 529 100% 0 0

Chromosomal Locations for CCDS 30507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 161777553 161779142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGATGACCTGCAGTCCCAGAATCTTTCCATGGACATGACTGACTCCCCTCCCACTTTGGCTAATAACA
GACTGGAGAACCGCATGGCCCAGCTGATAACTACCGAGGCCTGGAACATCAACTCCACTGACCTGGTAAA
GAAGGCCCTGGTGACCGTTCCGGCCCCATCAATTCTGAACCCCCCAGCTGAGTCCCAGAGTGGCATGGCT
CTGAAGGTAGCAGCCACCGTGCTGCAGCCCCTGTGCCTTGGGGAAAGCCCAGTGGTGATGCCCATTCACA
TGCAGGTGGAGGGAAGCTCTGCGCCAGAGCTCAACCCCAATGGCAACGCTACCTACGTTATGACGACACA
AGGCCCCGTGCAGCTACCAGTGGTGTTGGAACAGCATGTTTTCCAGCACCTCAACTCCCCTCTAGTCCTG
CCACAGGAGGCCCCGTGCTCCTCCAATGCTATCCACAACAACCTCTTCCAGGGGGCTGAGGACTCTGAGG
CCCAGCCTCAGCTCCTGGACCTGAGGATCCCAAGTCAGCCACAGGAGCCCGCATTGCCTTTTGAAGCTGT
GCTCCAGAATTTATTCCCCACCCAAGGCTCTCTGGGCCCTCCACCCTGCCAGCCTCCTCCTGGCTATGCT
CCAGTGCCTCCCCAGCCCTTTAACTCCCCCTTGTCCCCCCTAGTCCCGCCAGCTACCCTCTTGGTGCCCT
ATCCTGTGATTGTCCCCTTGCCAGTTCCAGTGCCCATCCCCATCCCTGTCCCAGTGCCTCAGAGTACTGA
ATCCAAGTTCAGCCCCACTTTCCCCAAGCCGCCATCTTCCTTCGGCTTGCACTCCTTTAAAGGCACCCAG
ACCACTCTGGAAAAGGACGAACTGAAGCCCTTAGACATCCTCCAGTCAAAGGAGTATTTCCAGCTCAGCC
GCCACACAGTCATCAAGATGGGGAGTGAGAATGAGGCCCTGGATCTGTCCATGAAGTCAGTGCCCTGGCT
CAAGGCTGGGGAAGCTAGCCCCCCAGTCTTTCAAGAGGATGCAGCCCTAGATCTGTCTTTGGCAGCCCAC
CGAAAAGCTGAGGCTCCTCCAGAGACATTGTATAACAACAGTGGGTCAGCAGACATCCAGGGTCACACCA
TACTGGAGAAACTTTCCAGTGGCATGGAAATGCCCTTTGCCCCTGCCAAGTGTTCTGAAGCCTCAGCCAT
GATGGAGAGCCACAGCAGCAACAGCAACGGCACTGAGATGGTCAGTCAGCCCAGCCATCCTGGCAGTGAG
CTGAAGGCTGAAAATAACATTGAGATCTTAAGTGAGTCTCAGGCGGCCAAGGTCATTGTGTCAGTTGAAG
ACGCCGTGCCTGCCATCTTCTGTGGCAAGATTAAAGGCCTCTCAGGGGTATCCACCAAAAACTTCTCCTT
CAAAAGAGAAGACTCTGTGCTTCAGGGTTATGATATCAACAGCCAAGGAGAAGAGTCCCTGGGAAACGCC
GAGCCCCTTAGGAAACCCATCAAAAACCGGAGCATAAAGTTAAAGAAAGTGAACTCCCAGGAAATACACA
TGCTTCCAATTAAAAAACAACGGCTGGCCACCTTTTTCCCAAGAAAGTAA

Translation (529 aa):
MDDLQSQNLSMDMTDSPPTLANNRLENRMAQLITTEAWNINSTDLVKKALVTVPAPSILNPPAESQSGMA
LKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPVQLPVVLEQHVFQHLNSPLVL
PQEAPCSSNAIHNNLFQGAEDSEAQPQLLDLRIPSQPQEPALPFEAVLQNLFPTQGSLGPPPCQPPPGYA
PVPPQPFNSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPVPVPQSTESKFSPTFPKPPSSFGLHSFKGTQ
TTLEKDELKPLDILQSKEYFQLSRHTVIKMGSENEALDLSMKSVPWLKAGEASPPVFQEDAALDLSLAAH
RKAEAPPETLYNNSGSADIQGHTILEKLSSGMEMPFAPAKCSEASAMMESHSSNSNGTEMVSQPSHPGSE
LKAENNIEILSESQAAKVIVSVEDAVPAIFCGKIKGLSGVSTKNFSFKREDSVLQGYDINSQGEESLGNA
EPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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