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Report for CCDS49890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49890.1 Public Mus musculus 16 Krtap24-1 23 108 98 CCDS HistoryNCBI Gene:239932Re-query CCDS DB by CCDS ID:49890.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052512.3 ENSMUSP00000052005.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052512.3Link to Ensembl Protein Viewer:ENSMUSP00000052005.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052512Re-query CCDS DB by Protein ID:ENSMUSP00000052005
Original member Current member NCBI NM_001163141.1 NP_001156613.1 Accepted alive Link to Nucleotide Sequence:NM_001163141.1Link to Protein Sequence:NP_001156613.1Re-query CCDS DB by Nucleotide ID:NM_001163141Re-query CCDS DB by Protein ID:NP_001156613Link to BLAST:NP_001156613.1

Chromosomal Locations for CCDS 49890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88611490 88612236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTCTCTTCGGGGCTATCCTAGGCTTTGCAGTGCTACATCCCATAGAAACCACTGCTACATCCCCGTGA
CGCCTTCCATCACAGTCTGCTCAGATGATGTAAACCCTACCTTTGGACCTTACTTACCCAGCAGCTACCA
AGGCAATCTCTGGCTTCTGGACCATTGCCAAGACTCCTACTGTGAAGCATCCTTCTGTGACTCTCCCAGC
TGTGTGCTCAAGACTTGTGCTCCAAGTTGTGATCCCACGGACTCCTGTGTGCCTTGCAATTCCCTGTCTG
CAAATCAAGTTGTTAGTGACTGCGAAACTACCAAGATCAGAGCCAGACCCAGCTGCAGTTCCTCTACTGG
GACCAAAGGGTATGTATCCAACTGCACCACGGCTACTCGATCTGCATCTAAAGCCTGTCAGACTCTTCAA
AATGGCTCCGGCTTCATAGGGCAATTTAATTCCTTCCCTAAGAATCTTCAGGCCCCGCACCACTGTATTC
TGGGCAACAATGGATATAGAAGCTATGGAAATTTTGGATTCATCACCAATGGCTTCTCTCCATCTTGCTA
TACTATCAGTAGCTACCATCCCCGCAGTTACCTAATGAGATATTGCCAGTATCCAAATTACGTGCCTTCA
AGCTTCCCATACCGGAGCTACTTATGTAGGAATTTTCAGTCTCTGAGCCGTATTCCTAGTACATTCCCAC
CTCTGAGATACTTATGCAGCAGTAACAGACCTCTGCATTGCTACTGA

Translation (248 aa):
MSLRGYPRLCSATSHRNHCYIPVTPSITVCSDDVNPTFGPYLPSSYQGNLWLLDHCQDSYCEASFCDSPS
CVLKTCAPSCDPTDSCVPCNSLSANQVVSDCETTKIRARPSCSSSTGTKGYVSNCTTATRSASKACQTLQ
NGSGFIGQFNSFPKNLQAPHHCILGNNGYRSYGNFGFITNGFSPSCYTISSYHPRSYLMRYCQYPNYVPS
SFPYRSYLCRNFQSLSRIPSTFPPLRYLCSSNRPLHCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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