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Report for CCDS50011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50011.1 Public Mus musculus 17 Tnfrsf12a 23 108 98 CCDS HistoryNCBI Gene:27279Re-query CCDS DB by CCDS ID:50011.1Re-query CCDS DB by GeneID:27279See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167059.8 ENSMUSP00000131574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167059.8Link to Ensembl Protein Viewer:ENSMUSP00000131574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167059Re-query CCDS DB by Protein ID:ENSMUSP00000131574
Original member Current member NCBI NM_001161746.1 NP_001155218.1 Accepted alive Link to Nucleotide Sequence:NM_001161746.1Link to Protein Sequence:NP_001155218.1Re-query CCDS DB by Nucleotide ID:NM_001161746Re-query CCDS DB by Protein ID:NP_001155218Link to BLAST:NP_001155218.1

Chromosomal Locations for CCDS 50011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23675991 23676046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23676139 23676273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23677327 23677420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGGCTTCGGCTTGGCCGCGGTCTCTGCCGCAGATCCTCGTGTTGGGATTCGGCTTGGTGTTGATGCGCG
CCGCGGCCGGGGAGCAAGCACCAGGCGCCGCAGCACCTCCTGCCCACTTCAGGCTACTGTGGCCCATTCT
GGGGGGCGCTCTTAGTCTGGTCCTGGTTTTGGCGCTGGTTTCTAGTTTCCTGGTCTGGAGAAGATGCCGC
CGGAGAGAAAAGTTTACTACCCCCATAGAGGAGACTGGTGGAGAGGGCTGCCCAGGTGTGGCACTGATCC
AGTGA

Translation (94 aa):
MASAWPRSLPQILVLGFGLVLMRAAAGEQAPGAAAPPAHFRLLWPILGGALSLVLVLALVSSFLVWRRCR
RREKFTTPIEETGGEGCPGVALIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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