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Report for CCDS27998.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27998.2 Public Mus musculus 16 Rimbp3 23 108 98 CCDS HistoryNCBI Gene:239731Re-query CCDS DB by CCDS ID:27998.2See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 27998.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27998.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169803.4 ENSMUSP00000127909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169803.4Link to Ensembl Protein Viewer:ENSMUSP00000127909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169803Re-query CCDS DB by Protein ID:ENSMUSP00000127909
Original member Current member NCBI NM_001033338.3 NP_001028510.2 Accepted alive Link to Nucleotide Sequence:NM_001033338.3Link to Protein Sequence:NP_001028510.2Re-query CCDS DB by Nucleotide ID:NM_001033338Re-query CCDS DB by Protein ID:NP_001028510Link to BLAST:NP_001028510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028510.2 1606 Q3V0F0 1606 100% 0 0

Chromosomal Locations for CCDS 27998.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17208714 17213534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4821 nt):
ATGACAAAGGACTCACCCACCCCCTTGGGTGGTGGCCGCGCGTCGCCCAAGAAGCCAAGCAGCCCCGGCC
CAGCGGCCGCAGTGCTGGAGGAGCAGAGACGAGAGCTAGAAAAACTACGGGCAGAGCTGGAGGGCGAGCG
CGCGCGCGGCCGGTCGGAACGGAGGCGTTTCGCTACCCAGACGCGCCAGCTGCGGGAGTCGGCTGAGCAG
GAGCGGCAGCAGCTGGCTGACCATCTGCGCTCCAAGTGGGAGGCACGACGCCTCCGGGAGCTGCGGCAGC
TGCAGGAGGAGGTGCAGCGCGAGCGTGAGGCCGAGATCCGGCAGCTGCTGCGCTGGAAGGAGGCAGAGAT
GCGGCAGCTGCAGCAGTTGCTACACCAGGAGCGCGATGTTGTATTGCGCCAGGCAAGGGAGCTTCAGCGT
CAGCTGGCCCAGGAGCTAGTGAACCGTGGTTACTGCAGCCGCTCAGGGGCATCCGAAGCCTCCGCGGCAC
AATGCCGCTGTCGCCTGCAGGAAGTGCTGGCGCTGCTGCGCTGGGAGACCGACGGCGAACAAGCCGCGCG
CATCCGCCACCTGCAGGCGGCGCTAGACGTGGAGCGCCAGCTATTCCTTAAATACATCCTAGAGCACTTC
CGCTGGCAGCCGGCTTTACCGGGACCCGCGGACCCCCAAGCCACGCATTCCTTGGAAGAGCCGCCCCTAG
AAGCCCAGAGTAACACTGGTGGCACCCCAAAGCCTGCTCGTCGACTCGGATCCCTCGAAAGCCTGAACAC
TGGCGTCCGGGTTCATTCTCCAAACGACCTGCTGCCCACGCGCGCCGGCTCCCTCGAATCTTTGGCAACA
GCACATTCCTGCTCACTGGACAACACACTGAATTGCTCCCAGGCTTCTGAATCCGAGGTAAGGGCCCCTG
CGACCAGCGCGTCTATTCCAGACACCTCCAGTCCCCAGCCGCCGCCTCAGCTACCATCAATACATAGGAA
ACCTAATGACCTGCAGAAAGAAAGCTCCGAGAACAAGCCCTGCGAAGCCTCGACCTCCTCGCCTCCGGGT
CTGGACTACCAGGAACTGGTGAGGCAGAACTCGGAGCTGGCCGAGGCATTGCAGGTGCTGGTTCGCCGCT
GTTGTGACCTGCGCGAAGAAAACTTGCATCTGCGGCGTAAAGGCTTCTCCGAGGAGGCAGGAGAGAAAGT
GAAATGGCTCAAGGTGAAGCACGCAGAGCTGACCGATCTCGCTCAGCGCCTTGAAGACAGGGCCCGCAAG
CTTCAGGAGACCAATCTGAGGGCCATGAGTGCTCCAGTGCCAGGTGAGAGCCTCGAAGGTCTGGACCTGA
GCCAAGTGTTTACCTGCCAGCGTGCTCAGGACCTGTCAGAACAGGCTGGCGCGCTGCAAGCCAAGGATCT
ACAGATCGAAGCATTGAGGCGGGAGTGCCACCTGCTGCAGGCGCGCATCGCCGCGGACCTTGGCAGCTCC
TCGCATCCTGAAGAGGGCGCCACGTGCGCGCAATGGTGCAACATCAGTGACTTGGACCGGCTGCAGCGTG
AGTCTCAGCGGGAAGTGCTGCGCCTGCAAAGACAGTTGACTCTACATCAGAGTAAAGCAGGCGCCTGGGC
AGACGCGGGCAGACCCAGCACACCCTCGGAGATAACTCGGCACCAGGTGCAGGCGCTGGAACGCGAGTTG
GGTTTACAGCGGCGGGAATGCGAGGAACTGAGCGTTCAGGCAGCCGCAGCTGAGCGGCGCTACGAGGAGA
CAGAGGCACAACTGCAGGCCGCGCTGCACAAAGGCGCCAGGCTGTCAGAGGAGAATGCACGGCTGCAGGC
CCTGGCCAACTGGATGAAGAAGATGGCAGATGAGAACAGCAATGTTTCCCGGCAGCAAAGTCACACGAGG
CAGAGGCAGGAACTCGAAGCCACTAGCCTGCTGGCTGAGCAGCTGCTGCAACAAGAGGGATATGCGCAAG
ACAGGCGGCAGCAGCTGCAGCACTACAAGAATAAAGCCCTAAGTGACCTTAGGACTTCCGGGAAAGAGAT
GCAGGGGTTGCAATTTCAGCCTGGCCACCCCTCAGAGACATCAGAGACCACCCAAGCTTCAGAGTCCCAA
GCCAGGGATAGCGGGAGACCCACGTTCAAAACAAAATCTGAAGAACGTGTATTACCTTTGCCTACCAGGG
ACATACAGCCTCCTGCTTGTCTCTCCCAGCAGGAGAATCCAGTTATCGTTGAGGAACCAGCTGCTGGCCC
CCAAGTGTCAGACAGAAATTCAACTAGTCAGTCTCTGGACTCCAAACCGCAAGCCAAGAAAACCAGTTCA
CAGTCAAATTCCTCCTCAGAGGTAGAGTCCATGTGGGCTACAGTGCCATCTTGCCTTTCTTTGGACATGG
ACACAGCAAGTGAAGTGGATGATTTAGAACCAGACAGTATGTCCACTCCCCTGGAAATGAGGAGCCTTGA
GGCTCCCATCATTCCCAAGCTCAAGCTCTTCTTGGCTAGATCTAGCTACAATCCATTTGAAGGGCCTAGT
GAGCATTGTCAAGGCAAGCTGCCCCTCACAGCTGGGGACTATGTCTATGTTTTTGGGGACATGGATGAGG
ATGGCTTCTATGAAGGGGAGCTTGTGAATGGGCAGCGAGGGCTAGTCCCCTCCAACTTAGTGGAACCGAT
TTCAGGAAGCCCTATTCTGAACCACCTATTCCTCAAGTCCCCTGACATTGGTCCCACTGCACTACCAGCT
GGGCACAGCAAAGTCTTGAAGAAAGGCAGCTTATTACTTGGGGAAGTACAGGAGAGAGGTCTGTGTCAGG
TAGGAAGGGTAGACTCTAAGACAGATATGGCAGCAGAGAGTTTGAAAACCAAGACAGAAGCCTGTTGGCT
GGGCTTGAAATCAAGCTTGGAGGAGCAGAGCTTCTCCAGACCCCTCCTGGAGGCCAAAGGCGCATTCTGT
CTGGCCCCCATGGAACTACAGCTGCAGAATGTCACGGCTACCTCCGCCACCATTACCTGGGCCTCTGGCA
GCAATAGATATCCGCATGTGGTGTACCTAGATGATGAAGAGCATATCCTGACTCCCTCAGGTGTGAACCA
CTACACCTTTCAAGGCCTACATCCTGGCACGTGTTACCGGGTGAGGGTGGGGGTACAGCTACCTAGGGAC
CTACTACAGGTGCTCTGGGAAACAACGTCCTCCACTCTAACTTTTGATACACCTTTAGCAGGTCCCCCTG
ACCCCCCTCTGGATGTGCTGGTGGAACACCATGCCTCTCCGGGTGTCCTAGTGGTCAGTTGGCTCCCTGT
GACCATAGACTCAGCTGGGTCCTCCAATGGAGTGCAGGTCACTGGCTATGCTGTGTATGTAGATGGCTTC
AAGGTGACCGAAGTTGCCGACGCCACTGCTGGAAACACCCTGTTGGAATTTTCTCAGCTTCAGGTTCCCC
TATCCTGCCAGAAGGTTTCAGTGAGAACCATGTCACTGTATGGCGAGTCTCTGGATTCAGTACCGGCTCA
AATCCCCGAGGACTTCTTCTCCTGCTGCCCATTCCTAGGAGCTCCTCCCTTTAACTACACAGATGGTAAC
CCTTTCCCTGTCTGTCACCAGAAGCTGGTACAAGCTTCTCTGGGTGCCAAGTCCAGTCCTCGTGGCCCTG
GAAACTGTGGGGAGCCCCAGGCGAAGTTTCTAGAAGCATTCCCTGAAGAACATCCAAGGAAGCATTTGTC
ACTGTCCAGCCTGAGCTCAGATGGAACAAATAGCCAAGCTCAGGGGCCCACAGAAGCCTGGAAGGGCTAC
GAGAAGGACCTGTCCTTTCAGAAGAGTCCCCAGAACCACAAGCCACCTCTTCTCTTTGGCCAGTCTGGGG
TAGAGGAAGGACATGCCCCACACATATGCATCAGTGGGAGTCCTGCTCCAGGATTTGTCCATCTCTCCTC
AGAAATTGGACATGGAAAAATACGTTGTTGGGAGAAGCCTGGCCTTGAGAAAGCCCTTCTTCAAAATCAA
TATGCCCCGATGGTCCCACCTCACCAGCAAGGCTCCAGCCAGTGCCAACCAGCTGACTTCCATCATGTTT
TTGAGGAGAAGGAGGCCCTGTGTTTGGATTCTCAGGGCACAGAGAAGCCAGAGCAAAGAAAGAACAAGTC
CCAAAATGGACAGAGACAAGGGACTCCCGGAAGCAAGAGAGAGTGCTCAGTGCTATGCCCAGCACCAACC
AACAAAGTCATTAAGATGACAAGTGGTAGCCCAGACCAGCTGGAGACTGACGCAAACAATCCAGTCAGGG
TCTTCCTGGCCCTCTTTGACCATAGCCCCCTTGTAATATCTGTCAACTCAGAAGCTGCAGAAGAAGAGCT
GGCCTTCCAGAAAGGGCAGCTGCTGAGGGTATGGGGTTCACTGGATCTCCATGGCTTCTACCACGGAGAG
TGCAATGGACACCTGGGCAAAATCCCCGGGCACCTGGTAGTTGAGGTAGAGGTGGGCACACAACAGACTG
ATGGGAGGTGGCATCTGCCAGCACAAGGCCATCTGCTTTCTGAGACTCAACGTGAAGACTTGGAGGGTCT
AACCAATTCCCAGGGATCTTACATGCCTCAAGGGAACTCCAGAACACCCACACTGTGGACCCCAAAGACA
ATGGTGGCAGCTCTGGACTACGATCCCAGGGATGGTAGAGCAGGGGTCCAGGCAAAGGGCAAGCTGGTAT
TGAGAGCTGGAGATGTAGTCACAGTTTATGGGCCTGTGGATGATAAGGGATTCTACTATGGTGAGTATGG
TGGACACAGGGGCCTGGTCCCAGCCCACCTGCTGGATGACTTGCCTGTCCATGGAGAGTAA

Translation (1606 aa):
MTKDSPTPLGGGRASPKKPSSPGPAAAVLEEQRRELEKLRAELEGERARGRSERRRFATQTRQLRESAEQ
ERQQLADHLRSKWEARRLRELRQLQEEVQREREAEIRQLLRWKEAEMRQLQQLLHQERDVVLRQARELQR
QLAQELVNRGYCSRSGASEASAAQCRCRLQEVLALLRWETDGEQAARIRHLQAALDVERQLFLKYILEHF
RWQPALPGPADPQATHSLEEPPLEAQSNTGGTPKPARRLGSLESLNTGVRVHSPNDLLPTRAGSLESLAT
AHSCSLDNTLNCSQASESEVRAPATSASIPDTSSPQPPPQLPSIHRKPNDLQKESSENKPCEASTSSPPG
LDYQELVRQNSELAEALQVLVRRCCDLREENLHLRRKGFSEEAGEKVKWLKVKHAELTDLAQRLEDRARK
LQETNLRAMSAPVPGESLEGLDLSQVFTCQRAQDLSEQAGALQAKDLQIEALRRECHLLQARIAADLGSS
SHPEEGATCAQWCNISDLDRLQRESQREVLRLQRQLTLHQSKAGAWADAGRPSTPSEITRHQVQALEREL
GLQRRECEELSVQAAAAERRYEETEAQLQAALHKGARLSEENARLQALANWMKKMADENSNVSRQQSHTR
QRQELEATSLLAEQLLQQEGYAQDRRQQLQHYKNKALSDLRTSGKEMQGLQFQPGHPSETSETTQASESQ
ARDSGRPTFKTKSEERVLPLPTRDIQPPACLSQQENPVIVEEPAAGPQVSDRNSTSQSLDSKPQAKKTSS
QSNSSSEVESMWATVPSCLSLDMDTASEVDDLEPDSMSTPLEMRSLEAPIIPKLKLFLARSSYNPFEGPS
EHCQGKLPLTAGDYVYVFGDMDEDGFYEGELVNGQRGLVPSNLVEPISGSPILNHLFLKSPDIGPTALPA
GHSKVLKKGSLLLGEVQERGLCQVGRVDSKTDMAAESLKTKTEACWLGLKSSLEEQSFSRPLLEAKGAFC
LAPMELQLQNVTATSATITWASGSNRYPHVVYLDDEEHILTPSGVNHYTFQGLHPGTCYRVRVGVQLPRD
LLQVLWETTSSTLTFDTPLAGPPDPPLDVLVEHHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYVDGF
KVTEVADATAGNTLLEFSQLQVPLSCQKVSVRTMSLYGESLDSVPAQIPEDFFSCCPFLGAPPFNYTDGN
PFPVCHQKLVQASLGAKSSPRGPGNCGEPQAKFLEAFPEEHPRKHLSLSSLSSDGTNSQAQGPTEAWKGY
EKDLSFQKSPQNHKPPLLFGQSGVEEGHAPHICISGSPAPGFVHLSSEIGHGKIRCWEKPGLEKALLQNQ
YAPMVPPHQQGSSQCQPADFHHVFEEKEALCLDSQGTEKPEQRKNKSQNGQRQGTPGSKRECSVLCPAPT
NKVIKMTSGSPDQLETDANNPVRVFLALFDHSPLVISVNSEAAEEELAFQKGQLLRVWGSLDLHGFYHGE
CNGHLGKIPGHLVVEVEVGTQQTDGRWHLPAQGHLLSETQREDLEGLTNSQGSYMPQGNSRTPTLWTPKT
MVAALDYDPRDGRAGVQAKGKLVLRAGDVVTVYGPVDDKGFYYGEYGGHRGLVPAHLLDDLPVHGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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