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Report for CCDS25809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25809.1 Public Mus musculus 12 Osr1 23 108 98 CCDS HistoryNCBI Gene:23967Re-query CCDS DB by CCDS ID:25809.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057021.8 ENSMUSP00000055486.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057021.8Link to Ensembl Protein Viewer:ENSMUSP00000055486.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057021Re-query CCDS DB by Protein ID:ENSMUSP00000055486
Original member Current member NCBI NM_011859.3 NP_035989.1 Accepted alive Link to Nucleotide Sequence:NM_011859.3Link to Protein Sequence:NP_035989.1Re-query CCDS DB by Nucleotide ID:NM_011859Re-query CCDS DB by Protein ID:NP_035989Link to BLAST:NP_035989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035989.1 266 Q9WVG7 266 100% 0 0

Chromosomal Locations for CCDS 25809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 9579129 9579793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 9580490 9580625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGGCAGCAAAACCTTGCCAGCACCGGTACCCATTCACCCATCCCTGCAGCTTACCAATTACTCTTTCC
TTCAGGCAGTGAATGGCCTGCCCACAGTGCCCTCGGACCACCTGCCCAACCTGTATGGTTTCAGCGCTCT
TCATGCGGTGCATCTGCACCAATGGACGCTGGGCTACCCAGCCATGCACTTGCCTCGATCCTCTTTTTCT
AAAGTGCCAGGTGCGGTGTCCAGCCTGATGGACGCTCGCTTCCAGCTGCCAGCCTTCCCCTGGTTTCCCC
ACGTCATTCACCCTAAGCCAGAGATCACCGCGGGAGGCAGCGGCGCAGCACTTAAGACCAAGCCTCGCTT
TGATTTCGCTAACCTGGCCTTGGCTGCCACACAAGAGGATCCCACCAAGCTTGGCCGAGGGGAGGGCCCT
GGCTCCCCTGCTGGTGGGCTGGGCGCCCTCCTGGACGTGACCAAGCTATCCCCAGAAAAGAAGCCAACAA
GGGGACGCCTGCCTTCCAAGACCAAGAAGGAATTCGTTTGCAAGTTCTGTGGCCGCCACTTCACTAAGTC
CTATAACCTACTTATCCACGAGCGGACGCACACTGATGAGCGACCTTACACCTGTGACATCTGCCACAAA
GCTTTCCGGAGGCAAGACCACCTACGGGACCACAGATATATTCACTCCAAAGAGAAGCCTTTCAAGTGTC
AAGAGTGTGGGAAAGGATTCTGCCAGTCCCGGACTCTCGCTGTCCACAAGACGCTACACTCACAAGTGAA
GGAGCTCAAAACCTCCAAGATCAAATGCTAA

Translation (266 aa):
MGSKTLPAPVPIHPSLQLTNYSFLQAVNGLPTVPSDHLPNLYGFSALHAVHLHQWTLGYPAMHLPRSSFS
KVPGAVSSLMDARFQLPAFPWFPHVIHPKPEITAGGSGAALKTKPRFDFANLALAATQEDPTKLGRGEGP
GSPAGGLGALLDVTKLSPEKKPTRGRLPSKTKKEFVCKFCGRHFTKSYNLLIHERTHTDERPYTCDICHK
AFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHSQVKELKTSKIKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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