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Report for CCDS14593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14593.1 Public Homo sapiens X RHOXF1 24 110 108 CCDS HistoryNCBI Gene:158800Re-query CCDS DB by CCDS ID:14593.1Re-query CCDS DB by GeneID:158800See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14593.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217999.3 ENSP00000217999.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217999.3Link to Ensembl Protein Viewer:ENSP00000217999.1Re-query CCDS DB by Nucleotide ID:ENST00000217999Re-query CCDS DB by Protein ID:ENSP00000217999
Original member Current member EBI ENST00000703667.1 ENSP00000515423.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703667.1Link to Ensembl Protein Viewer:ENSP00000515423.1Re-query CCDS DB by Nucleotide ID:ENST00000703667Re-query CCDS DB by Protein ID:ENSP00000515423
Original member Current member NCBI NM_139282.3 NP_644811.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139282.3Link to Protein Sequence:NP_644811.1Re-query CCDS DB by Nucleotide ID:NM_139282Re-query CCDS DB by Protein ID:NP_644811Link to BLAST:NP_644811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_644811.1 184 Q8NHV9 184 100% 0 0

Chromosomal Locations for CCDS 14593.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120109192 120109302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120112869 120112914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120115465 120115862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGCGCGTTCGCTCGTCCACGACACCGTGTTCTACTGCCTGAGTGTATACCAGGTAAAAATAAGCCCCA
CACCTCAGCTGGGGGCAGCATCAAGCGCAGAAGGCCATGTTGGCCAAGGAGCTCCAGGCCTCATGGGTAA
TATGAACCCTGAGGGCGGTGTGAACCACGAGAACGGCATGAACCGCGATGGCGGCATGATCCCCGAGGGC
GGCGGTGGAAACCAGGAGCCTCGGCAGCAGCCGCAGCCCCCGCCGGAGGAGCCGGCCCAGGCGGCCATGG
AGGGTCCGCAGCCCGAGAACATGCAGCCACGAACTCGGCGCACGAAGTTCACGCTGTTGCAGGTGGAGGA
GCTGGAAAGTGTTTTCCGACACACTCAATACCCTGATGTGCCCACAAGAAGGGAACTTGCCGAAAACTTA
GGTGTGACTGAAGACAAAGTGCGGGTTTGGTTTAAGAATAAAAGGGCCAGATGTAGGCGACATCAGAGAG
AATTAATGCTCGCCAATGAACTACGTGCTGACCCAGACGACTGTGTCTACATCGTCGTGGACTAG

Translation (184 aa):
MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGMNRDGGMIPEG
GGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENL
GVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVYIVVD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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