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Report for CCDS49573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49573.1 Public Mus musculus 15 Card6 23 108 98 CCDS HistoryNCBI Gene:239319Re-query CCDS DB by CCDS ID:49573.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118365.2 ENSMUSP00000112833.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118365.2Link to Ensembl Protein Viewer:ENSMUSP00000112833.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000118365Re-query CCDS DB by Protein ID:ENSMUSP00000112833
Original member Current member NCBI NM_001163138.1 NP_001156610.1 Accepted alive Link to Nucleotide Sequence:NM_001163138.1Link to Protein Sequence:NP_001156610.1Re-query CCDS DB by Nucleotide ID:NM_001163138Re-query CCDS DB by Protein ID:NP_001156610Link to BLAST:NP_001156610.1

Chromosomal Locations for CCDS 49573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 5098385 5101095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 5104903 5105436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 5108088 5108370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGGCTACAGAGGGTGCTTCCTCAGAACTCATAGAAAAAAAACGTACGAAGTTGCTCAGTGTCCTCCAAC
AAGATCCGGACTCTATCTTGGACACGTTAACCTCTCGGAGCCTGATTTCTGAGAAGGAGTATGAGACTCT
GGAGGAAATCACAGATCCCCTGAAGAAAAGTCGGAAGCTGTTAATTTTGATACAGAAAAAAGGAGAGGAC
AGCTGTCGGCGTTTCCTCCGGTGTTTGTCTAATGCCTTTCCAGAGTCAGCGTCCACAGTGGGCTTCAAGC
ACGAAGTTCCACGGCAGGAAGCTGAAGAGACTGTGGGGGTGAACAGGAATTCTGAAGATCCCCTTTCTCT
TGGGACAATAATCCCGGAGATAGCAGAGCTCTCAGAAGAGAAAGAATGTCTAGATCTGAGAGCTTTGAAG
TTCTTCACCTACAAGGAAAGTGGCCACAGGGAACTTGCAGTATCCTCCCGGGAGAACCAGGAAGGGCATG
GGACACCGCAGGTCACGGCTCCCCATTCAGTCAAAAGAGTTGAGTATGAAGTCCCAGCAAGTATCACCTT
CTTAAGCAATGGACAGAGATACGAGGAGCCAGATGATTCGCTGTACTTAGAGGAAGGGGAACATCAAGAG
TACCTTGGGTTCCCTGAAGATGTCGAGACTGTCTTGGAGGAAGAGGCCGGCAAGGACCCACAGTGCTTTG
TATATGATAATGAAGAGGAATGGGAGAATGAAGAGACCATGGGGTTCTCCAGTGAAGCCAGTAGCTGTTC
AGAGATCAATTTCTCATTGGAGGAGGAGGAGGAGAAAAGCGCTGAAGAGAGAAAAAGAGTATTTCAGCAT
GTTCTGTCTTGTTTGAACATGGATAGAAGCAGGAAGCTTCTCCCAGATTCTGTGAAGCAGTTTTCCACAG
ACCGAGGACGTGAGTGGACACCCGAGACCCCAGGGGACTTAGCTTGGAATTTCCTGATGAAGGTTCAGGC
TTTAGACTCGACAGCCAGAGATTTTACCCTTAGGCACAAGATGGTGGATGAAGAGAACAAAGAACTGCTG
CTGGCTAGAATGGAGAAGTTAGGAATTGGAGACGCACAAACCATCCATCCCCTGGATGTCCTCTGCGCCT
GCATGCTTTGCGCAGACAGCTCTTTGCAACGTGAAGTCATGTCAAATATGTACCACTGCTGCTTTGCTCT
TCCCCTGCTACTGCCAGATGCAGAGAACAACAAAAGCATCTTAATGATGGGGGCCATGAAGGACCTAAAG
CAGCACGCAACGCAGTCCTCAGGCGGGCCCCCCAGGGAAACAGACGCGTCTCTGAGTCTCATGAAGATGC
CTGTCATCTCTTTTGTGCGACTGGGACACTGCAGCTTCTCCAAGTCCAGAATTCTGAACACACTGCTCAG
CTCCTCTCGACAGAAACCACACACGTTTTTCCTCCGTCGGGACCTGTCGGTCCCTGTGCTGCCTCGGCAA
ATTTCTGATGGCCTGGTGGAAGTGATGTGGCACTTTCCCGACGATGCAGAGCTAACGGTGAGCCCACACG
TTTTCCAGAAACCTGTTGCTGTGGCCAACCTTCGTGGCGATCTAGAAAGCTTTTGGGTGCAATTTGGGTT
TCTGGTGGAAGTTTCCTCCGCTGTGTTCTTCCTCACAGACTGCCTCGGGGAGAAGGAGCGGGCCCTGCTG
AGGTTCTTAGGAGACGATGCCATTGAAAGGTGCTACGTCATCCTCAGTCCCCAGGCCAAGGAGAGTGAAG
AGGCTCAGATTTTCCAAAAGATCCTAAAACTGAGGCCATCACAGCTACTGTTTTGGGAAGTAGAGGAAGC
CGGGGATAGAAGGAGGGCTATGGAGGCCCTTCAAGCTGCCCTCCAGGAAGTAATGTCGTCTCCACTCAAA
TGTGTGTCCCTTGAAGATATGGCCTGTCTGGCCAGGGAGCTGGGGATTCAGGTAGACCAAGACTTTGAAG
TTATTCAAGATACTCAAGTTTCCCCCAGAACAATTGAAGGTGAGAACCAGCAACCACAGAGTCAGACAAA
AAGCCCATCTGAAAGCCGAACTCAGAAGCCACTCAGAGAGCCTGGAACTCAATGTGAGGACAGCCAGAAT
GCTGTAATCTTCCATCAGACTCCAGTATTCATGCCTTATCCAGCACACCCATGGCCCTTGCCCATTGAAG
CTGGAAGTAACTTTTACCATGTTCCTTTGAGAGCCCCCCGGGCTATAAGCTCCCACTTTAGATCACAGCA
GAAGGCTGAGTGGTTCTTTCCATTCCCCCATCAGAATACAAGTGTTCACAGCAGAGGTCAAAACTTTGCT
ATTAAATACCTCCAACCCTGGAGATTTTATTCAAGGGAAAGATTCACAAGATGTTCAGCAACTCCTCAGC
AGTATCACCCGAATGGACCATTTGGGAGATCACAGAGACAGGCTTCTCCTGTACAGACCCATCCTAAGAG
CAGGCAGATGTCCAGAACTCTTGAGAGGTCTGGGACAGTGGTCTCTCGAGTAGGTCACGGACGTTCTCTT
GGCTCACAAGCAAGGAGAGCTGCAGGGAAGCCACAACCTGAGAAAGCCTGTGCGCAGGGGCTGCAGCTGA
CTAAAGCAGCTGGAAAGTCTATAAGGACACTGCCCCACATTAAATATCCTCACCCTCAGCCCTGTCAGCC
AGCAGGAGCCAGTCAAGAACGGATAATGCCAGTCTCTCATCAAGGAGCCCAACAAACAACACAGGGAAGG
CCTGCGGATTTTGCTTTCAAACCAGGGTCTCAATCTACATCTGGGAGTAAACTTTCATCTACCTCCCAGT
CCAGCGCCCATCAACCCAAATTCCAGAGCAAACACTTCCAGCCTCAGCCGTTTCAACCCGTGCCTTCTCA
GAAAAAACCGTCTCACTCCCGGCCCTCCCAAGCTAAACCCCCTCATCTGGATCCCTCTCATGCAAACCTT
ACTCAGGGGCAGCCTTCCCAAGCTACACCCACTCACTCCCAGGCCTCCCAAGCTAAACCCACTCACTCTC
AAGCTAACTCTCATCATCCACATCCCTCCCATGCTAAACCTTCTCATCAGAATCCCTCTCATGCTAACCC
TACTCATCCGCAGTCCTCCCATGCTAAGCCCTCTCATCCGCAGTCCTCCCATGCTAAGCCCTCTCATCCA
CAGTCCTCCCATGCTAAGCCCTCTCATCCACAGTCCTCCCATGCTAAGCCCTCTCATCCACAGTCCTCCC
AAGCTAAGCCCTCTCATCCACAGTCCTCCCAAGCTAAGCCCACTCATCCACAGTCCTCCCAAGCTAACTC
CCATCATCCACAGGCCTCCCAAGCTAAGCCCTCTCATCCACAGTCCTCCCATGCTAAGCCCTCTCATCCG
CATCCCTCCCATGCTAAGCCCTCCCCATCCCAGTCTACTCAGTGTAAGGCACATAAAGCCCATCAGTCCC
AACCTAAGCCTTTTCAACCGAGACCCACTCAACCTAAATCCTCGAAGACTAAGCCTTCACAGGCCAGGGC
CTTCCACCCAAGAGCAGGGAGACGTTAA

Translation (1175 aa):
MATEGASSELIEKKRTKLLSVLQQDPDSILDTLTSRSLISEKEYETLEEITDPLKKSRKLLILIQKKGED
SCRRFLRCLSNAFPESASTVGFKHEVPRQEAEETVGVNRNSEDPLSLGTIIPEIAELSEEKECLDLRALK
FFTYKESGHRELAVSSRENQEGHGTPQVTAPHSVKRVEYEVPASITFLSNGQRYEEPDDSLYLEEGEHQE
YLGFPEDVETVLEEEAGKDPQCFVYDNEEEWENEETMGFSSEASSCSEINFSLEEEEEKSAEERKRVFQH
VLSCLNMDRSRKLLPDSVKQFSTDRGREWTPETPGDLAWNFLMKVQALDSTARDFTLRHKMVDEENKELL
LARMEKLGIGDAQTIHPLDVLCACMLCADSSLQREVMSNMYHCCFALPLLLPDAENNKSILMMGAMKDLK
QHATQSSGGPPRETDASLSLMKMPVISFVRLGHCSFSKSRILNTLLSSSRQKPHTFFLRRDLSVPVLPRQ
ISDGLVEVMWHFPDDAELTVSPHVFQKPVAVANLRGDLESFWVQFGFLVEVSSAVFFLTDCLGEKERALL
RFLGDDAIERCYVILSPQAKESEEAQIFQKILKLRPSQLLFWEVEEAGDRRRAMEALQAALQEVMSSPLK
CVSLEDMACLARELGIQVDQDFEVIQDTQVSPRTIEGENQQPQSQTKSPSESRTQKPLREPGTQCEDSQN
AVIFHQTPVFMPYPAHPWPLPIEAGSNFYHVPLRAPRAISSHFRSQQKAEWFFPFPHQNTSVHSRGQNFA
IKYLQPWRFYSRERFTRCSATPQQYHPNGPFGRSQRQASPVQTHPKSRQMSRTLERSGTVVSRVGHGRSL
GSQARRAAGKPQPEKACAQGLQLTKAAGKSIRTLPHIKYPHPQPCQPAGASQERIMPVSHQGAQQTTQGR
PADFAFKPGSQSTSGSKLSSTSQSSAHQPKFQSKHFQPQPFQPVPSQKKPSHSRPSQAKPPHLDPSHANL
TQGQPSQATPTHSQASQAKPTHSQANSHHPHPSHAKPSHQNPSHANPTHPQSSHAKPSHPQSSHAKPSHP
QSSHAKPSHPQSSHAKPSHPQSSQAKPSHPQSSQAKPTHPQSSQANSHHPQASQAKPSHPQSSHAKPSHP
HPSHAKPSPSQSTQCKAHKAHQSQPKPFQPRPTQPKSSKTKPSQARAFHPRAGRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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