NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27239.1 Public Mus musculus 14 Synb 23 108 98 CCDS HistoryNCBI Gene:239167Re-query CCDS DB by CCDS ID:27239.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Endogenous retrovirus

Sequence IDs included in CCDS 27239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059362.2 ENSMUSP00000061107.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059362.2Link to Ensembl Protein Viewer:ENSMUSP00000061107.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059362Re-query CCDS DB by Protein ID:ENSMUSP00000061107
Original member Current member NCBI NM_173420.3 NP_775596.1 Accepted alive Link to Nucleotide Sequence:NM_173420.3Link to Protein Sequence:NP_775596.1Re-query CCDS DB by Nucleotide ID:NM_173420Re-query CCDS DB by Protein ID:NP_775596Link to BLAST:NP_775596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775596.1 618 Q8BI41 618 100% 0 0

Chromosomal Locations for CCDS 27239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69290947 69292803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGACAGGCTTTTGGGTCCTCTGTTTCGTCCTTTTCCCCTCCTCCTTATCCTATCCGGAAAGCTGGATGC
CCCTTGTAAACCTCACTCACCACATCCTACGTGATACCAACTCTTCCCTGTTTTCCAACTGTTGGGTCTG
CTTGTCTACCCAAACCCAGCGGTCCTTAGCAGTCCCAGCCCCTCTGTCCATTTGGACAGATACACCCATG
AAGCTTCATCTTACCTACTCAGTCAGGCCCTTCTCTGGCTCCTTTTCCATTAGCGACATTGAAAGACGCC
TCCGTCTCTTCCGCCCACTGACTGCCTCCTATTCTTTCCACAATCCTGACAGAAGGGCGATTGCTTTTCT
TCAACTCGTCAGCTCAACAGGCATATTTCGGATCATCACCCGGATAACCTCTGTGATATATCCCCATAAG
GACCGTTTCTTCGAATCTGCCCAACGCCCTCTCTGGGGACCACTCTTTACTGAGACCGTGCTCAGGTCGC
AGGCCCCACTCTGCATATCTCGCTTTTTCAAGGTCTCAGCATATGCCACTTTTGTAGGCAACCTCTCTGC
CTCTCTCTGCAACTACACCATGCATATTTCACCTTCTACCAGTCATGAAAACCTAGATCTTTCCACCACC
CATACGTTCAAACAGGCAATGAAAAGACCGGATGCCAAATGGAAAAACCCGCTCCGTTTTTCCGGGCCCC
CCTCCCTCATCTTCTCGAAGCCGGCTTACTATCCCTGCCCAACAGACATCAAACACTGCCATACCTCTCC
GGCCACTCCCTGGATGCACTGTCCTCAGGCTCCCTTCGGCACCTGCTATAACCTCACTTTATTTGAACCA
GACAACTCAACCCACCCTGTTACCATGTCAGTGAACCCTACCCACTTCAAGGTCAAACTCCAGGGGCACA
GAGACCCCTATCCGCTCTCCCATTACCAGCCCCTCACGGGAGCTGCCCTGTCTGGACAATATTCAGTCTG
GGAGAACGAGATCACTGTCCAAGAAAACTGGGACATCACCTCCAACATTTTCTCACATCTTCTCAGCTTC
TCGTACGCCTTCTGCCTCAACTCTTCAGGCGTTTTCTTCCTCTGCGGAACATCGACTTACATCTGCCTCC
CAGCCAATTGGTCCGGTGTCTGTACCCTGGTCTTCCAATACCCGGATATTGAACTTCTCCCCAATAACCA
AACGGTGCCTGTTCCCCTTTTTGCTTCAGTTCTTTCCTCAGACTCAGTTCTTCGCCCAAAGAGGTCCCCT
CACCTCTTTCCCTTCCTTGCAGGCCTGGGTATCTCTTCTGCCCTTGGTACGGGGATAGCTGGCTTGGCCA
CCTCGACTCTCTATTTCCAACAGCTTTCTAAGGTTCTTTCCGAAACCTTGGAAGAAATAGCTGCCTCTAT
CACTACCCTCCAGAACCAAATAGACTCGCTCGCAGGTGTTGTTCTACAAAACCGCCGAGCTCTGGACCTC
ATCACTGCTGAGAAAGGGGGCACCTGTCTCTTCCTCCAGGAAGAGTGCTGCTTCTACGTAAACCAGTCTG
GAATAGTCCGGGACGCGGCAAGGAAACTCCAAGAACGAGCATCTGAACTCGGCCAGCATTCTGACTCTTG
GGGACAGTGGCCTGACCTTGGACGTTGGTTGCCCTGGCTGACTCCCTTTCTGGGACCTCTTCTCTTCCTC
TTCTTCCTACTGACATTTGGGTCTTGTCTTCTGAACTGCCTAACCCGTTTTGTGTCCCAGAGACTTGGCT
CCTTTGTTCAAGACACTGCCAAAAGGCATGTGGACAGCATCCTCCAAAATTTCCAATATAAAAAACTGCC
CCAAGACTCCCCAGATGAGGACACCATTCCTACATAA

Translation (618 aa):
MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPM
KLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHK
DRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTT
HTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEP
DNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSF
SYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSP
HLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDL
ITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFL
FFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH