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Report for CCDS36923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36923.1 Public Mus musculus 14 Cdh24 23 108 98 CCDS HistoryNCBI Gene:239096Re-query CCDS DB by CCDS ID:36923.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 36923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067784.7 ENSMUSP00000066005.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067784.7Link to Ensembl Protein Viewer:ENSMUSP00000066005.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067784Re-query CCDS DB by Protein ID:ENSMUSP00000066005
Original member NCBI NM_199470.2 NP_955764.1 Updated not alive Link to Nucleotide Sequence:NM_199470.2Link to Protein Sequence:NP_955764.1Re-query CCDS DB by Nucleotide ID:NM_199470Re-query CCDS DB by Protein ID:NP_955764
Current member NCBI NM_199470.3 NP_955764.1 Accepted alive Link to Nucleotide Sequence:NM_199470.3Link to Protein Sequence:NP_955764.1Re-query CCDS DB by Nucleotide ID:NM_199470Re-query CCDS DB by Protein ID:NP_955764Link to BLAST:NP_955764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955764.1 781 Q6PFX6 781 100% 0 0

Chromosomal Locations for CCDS 36923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54632113 54632612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54633047 54633295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54633459 54633570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54633650 54633771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54636333 54636469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54637321 54637574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54638004 54638191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54638327 54638494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54638568 54638687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54638871 54639165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54639344 54639544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2346 nt):
ATGTGGGGCCTTGTGAGGCTCCTGCTGGCCTGGCTGGGTGGCTGGGGCTGCATGGGGCGCCTGGCAGCTC
CAGTCCCAGCCTGGGCAGGGTCCAGGGGACACTCGGGTCCTACACTGCTGCGGACCCGAAGGAGCTGGGT
CTGGAACCAGTTCTTTGTCATTGAGGAATATTCTGGTCCAGAGCCTGTCCTTATTGGCAAGCTGCACTCA
GATGTTGACCGGGGTGAGGGCCGCACCAAGTACCTGCTGACCGGGGAGGGGGCAGGCACTGTGTTTGTGA
TTGATGAGGCCACAGGCAATATCCATGTGACCAAGAGCCTGGATCGGGAAGAGAAGGCACAATATGTGCT
GCTGGCCCAAGCTGTGGACCGTGCCTCTAACCGGCCCCTGGAACCCCCATCGGAGTTCATCATCAAAGTG
CAAGACATCAATGACAATCCGCCTGTGTTTCCCCTCGGGCCCTACCATGCCACCGTGCCTGAGATGTCCA
ATGTTGGGACGTCTGTAATCCAAGTGACTGCTCACGATGCCGACGATCCCAGCTATGGAAACAGTGCCAA
ACTTGTGTACACGGTGCTGGATGGGCTGCCTTTCTTCTCTGTGGACCCCCAGACTGGAGTGGTTCGTACA
GCCATCCCCAACATGGACCGGGAGACCCAAGAGGAGTTCTTGGTGGTGATTCAAGCCAAGGATATGGGTG
GCCACATGGGGGGGCTGTCAGGCAGCACTACAGTGACAGTCACCCTCAGCGATGTCAACGACAACCCCCC
CAAGTTCCCTCAGAGTCTATACCAGTTCTCAGTGGTGGAGACAGCTGGACCTGGAACCCTGGTGGGCCGG
CTTAAGGCCCAGGACCCAGACCTAGGGGATAATGCTCTCGTGGCATACAGCATCCTGAATGGGGAAGGAT
CAGAGGTCTTCAGCATCAGCACAGACTCCCAGGGCCAGGACGGGCTCCTTACTGTCCGCAAGCCCCTGGA
CTTCGAGACTCGTCGCTCTTACACCTTCCGTGTAGAAGCCACCAACACACTCATCGACCCAGCCTATCTG
CGGCGAGGTCCCTTCAAGGATGTGGCCTCGGTACGAGTGACTGTGCAGGATGCTCCAGAGCCGCCTGCCT
TCACCCAGGCCACCTACCACCTGGCAGTACCTGAAAACAAGGCCCCTGGAACCCTGGTGGGCCAGATCTC
AGCCAGTGACCTGGACTCCCCCGCCAGCCCCATCAGATACTCCATCCTCCCCCACTCGGATCCAGAACGT
TGCTTCTCCATTGAGCCCGAAGACGGCACTATCCGTACAGCAGTGCGCCTGGACCGCGAGGCTCGTGTCT
GGCACAACCTCACCATTCTGGCCACAGAGTTGGATAGCTCTGCACAATCATCCCGCGTGCAAGTGGCCAT
CCAGACCCTGGATGAAAATGACAATGCTCCCCAGCTGGCTGAGCCCTATGACATCTTTGTATGTGACTCT
GCAGCCCCTGGCCAGTTGATTAAGGTCATCCGGGCTCTGGACAGAGATGAAGTTGGCAACAGTAGCCAAG
TCTCCCTTCAAGGTCCTGTGGGCCCTGATGCCAACTTTACAGTCCGGGACAACCGAGATGGCTCTGCCAG
CCTGCTGCTGCCTTCCCGTCCTGCTCCGCCGCGCCAGGCCCCCTACCTGATTCCTATCGAACTCTGGGAT
TGGGGGCAGCCAGCCCTGAGCAGCACTGCCACGGTGACTGTGAGTGTGTGTCGCTGCCGGCCTGATGGCT
CCATGGCATCCTGCTGGCCTGAGGCTCAGCTATCGCCCACCGGTCTCAGCACTGGAGCCCTGCTTGCCAT
CGTCACATGTATGGGCACCCTTCTTGCCCTGGTGGTTCTCTTCGTGGCCCTGAGGCGGCAGAAGCAGGAA
GCCTTGATGGTACTGGAGGAGGAGGACGTCCGCGAGAACATCATCACCTATGATGACGAGGGTGGCGGAG
AGGAGGACACGGAGGCCTTCGACATCACAGCCTTGCAGAACCCGGATGGAGCCGCTCCTCCAGCAGCCGG
CCCGCCGGTACGCCGCGACGTGCTGCCGCGGACCCGAGCGCCACGCCAGCCCAGGCCACCCGGCCCCGCC
GATGTGGTGCAGTTGCTGGCGTTGCGGCTGCGCGAGGCGGACGAGGACCCCAGCGTGCCCCCGTATGACT
CGGTGCAGGTGTACGGCTATGAAGGCCGGGGCTCCTCCTGCGGCTCGCTCAGCTCCCTGGGCTCGGGCAG
TGAGGCTGGCGGTGTCCCCGGCCCCGCCGAGCCACTGGACGACTGGGGTCCACTCTTCCGCACTCTGGCA
GAGCTGTATGGGGCCAAGGAGCCCCCGGCCCCCTGA

Translation (781 aa):
MWGLVRLLLAWLGGWGCMGRLAAPVPAWAGSRGHSGPTLLRTRRSWVWNQFFVIEEYSGPEPVLIGKLHS
DVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKV
QDINDNPPVFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRT
AIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGR
LKAQDPDLGDNALVAYSILNGEGSEVFSISTDSQGQDGLLTVRKPLDFETRRSYTFRVEATNTLIDPAYL
RRGPFKDVASVRVTVQDAPEPPAFTQATYHLAVPENKAPGTLVGQISASDLDSPASPIRYSILPHSDPER
CFSIEPEDGTIRTAVRLDREARVWHNLTILATELDSSAQSSRVQVAIQTLDENDNAPQLAEPYDIFVCDS
AAPGQLIKVIRALDRDEVGNSSQVSLQGPVGPDANFTVRDNRDGSASLLLPSRPAPPRQAPYLIPIELWD
WGQPALSSTATVTVSVCRCRPDGSMASCWPEAQLSPTGLSTGALLAIVTCMGTLLALVVLFVALRRQKQE
ALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAAGPPVRRDVLPRTRAPRQPRPPGPA
DVVQLLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGVPGPAEPLDDWGPLFRTLA
ELYGAKEPPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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