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Report for CCDS23928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23928.1 Public Mus musculus 10 Ggt5 23 108 98 CCDS HistoryNCBI Gene:23887Re-query CCDS DB by CCDS ID:23928.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072217.8 ENSMUSP00000072074.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072217.8Link to Ensembl Protein Viewer:ENSMUSP00000072074.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000072217Re-query CCDS DB by Protein ID:ENSMUSP00000072074
Original member NCBI NM_011820.5 NP_035950.2 Updated not alive Link to Nucleotide Sequence:NM_011820.5Link to Protein Sequence:NP_035950.2Re-query CCDS DB by Nucleotide ID:NM_011820Re-query CCDS DB by Protein ID:NP_035950
Current member NCBI NM_011820.6 NP_035950.2 Accepted alive Link to Nucleotide Sequence:NM_011820.6Link to Protein Sequence:NP_035950.2Re-query CCDS DB by Nucleotide ID:NM_011820Re-query CCDS DB by Protein ID:NP_035950Link to BLAST:NP_035950.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035950.2 573 Q9Z2A9-1 573 100% 0 0

Chromosomal Locations for CCDS 23928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75589710 75589882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75602620 75602750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75602974 75603069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75603967 75604162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75604643 75604800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75605256 75605402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75608751 75608887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75609199 75609392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75609845 75609951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75610113 75610231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75610428 75610538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75614730 75614882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGGCTTGGGGTCACAGGGCCACGGTCTGCCTGGTCCTGCTGGGTGTAGGTCTAGGTCTGGTTATCGTTG
TGTTGGCTGCGGTCCTTTCTCCTCGTCAAGCCTCTTGTGGTCCCGGTGCCTTCACGCGTGCTGCGGTAGC
GGCTGACTCCAAGATCTGCTCGGATATTGGACGAGCCATCCTCCAGCAGCGGGGCTCACCTGTGGATGCC
GCCATCGCTGCCCTGGTCTGTACTGGTGTTGTTAACCCTCAGAGCATGGGTCTGGGCGGAGGGGTTGTCT
TCACCATCTACAATGCATCAACAGGCAAGGTAGAGATCATCAATGCACGGGAGACAGTGCCAGCCAGCTA
TGACCAAGGCCTGTTGAACCAGTGTAAAAACGTCCTGCCATTGGGCACAGGGGCCCAGTGGATCGGGGTT
CCTGGGGAGCTCCGCGGCTATGCTGAGGCCCACCGCCGCCACGGCCGCCTGCCTTGGGCTCAGCTTTTCC
AGCCCACCATTGCACTGCTCCGAGAGGGTTTCCGTGTGCCCTTTATCCTCAGCCAATTCCTCAACAACAG
CATCCTGCGGCCCCACTTGAGTGCATCAACCCTGAGACAGCTCTTCTTCAATGGGACAGAAACCTTGAGA
TCTCAGGACCCATTCCCATGGCCTGCGCTGGCCAACACCCTGGAGACTGTAGCCAAGGAGGGTGCGGAGG
TCTTATACACAGGGAGACTGGGCCGCATGCTGGTGGAAGACATTGCCAAGCAAGGAAGCCTGCTGACAGT
TCAGGACTTGGCTGCCTTCCAGCCTGAAGTGGTGGAACCCCTGGAGATGCCCCTAGGAAACTATACCCTG
TACTCGCCGCCGCCGCCTGCAGGGGGCGCTATTCTTAGCTTCATTCTCAATGTGCTGAAAGGGTTCAACT
TCTCTGCAGAGACGGTGGCGCGGCCTGGAGGGGAAGTGAACATGTACCATCACCTTGTAGAGACTCTCAA
GTTCGCCGTAGGGCAGAGGTGGCGGCTATGGGACCCTTCCAGTCACCCGGGGATACAGAACATCTCCCGG
GACCTCCTCCGGGAAGATCTAGCCCAGCGCATCCGCCAGCAGATTGACGGCCGTGGTGACCACCACCAGC
TCAGCCATTACAACCTGACTGGGGTCAGGGGCAACCGGATGGGCACCTCTCATGTGTCTGTGTTGGGAGA
AGATGGCAGTGCTGTGGCAGCCACCAGCACCATCAACACACCCTTTGGGGCGATGGTGTACTCCCCACGG
ACAGGCATCCTCCTGAACAACGAGCTTCTAGACTTATGCTGGAGACACATGCCAACATCCCCGATCACCC
CTCCACCTGTTCCAGGTGAGCGGCCACCATCTTCCATGGTACCTTCCATCTTGGTCAACAAAGGCCAGGG
ATCGAAGCTGGTGATCGGTGGGGCAGGTGGAGAGCTGATCATCTCTGCCGTGGCCCAGACTATCATGAAC
AAGCTGTGGCTTGGCTTTGACCTGACAGAAGCTATCGCATCTCCTATTCTACACGTCAACAGCAAGGGCC
ATGTGGAGTATGAGCCCAAATTCAACCAGGAGGTACAGAAGGGGCTACAGGACCGAGGCCAGATTCAGAG
CCAGAGCCAGCGGCCAGTTTTCCTGAATGCGGTCCAGGCTGTGTTTCAGGAAGGGCCCTGCGTCTATGCA
GCGTCTGACCTGAGGAAGGCTGGAAAGGCTTCAGGATACTAA

Translation (573 aa):
MAWGHRATVCLVLLGVGLGLVIVVLAAVLSPRQASCGPGAFTRAAVAADSKICSDIGRAILQQRGSPVDA
AIAALVCTGVVNPQSMGLGGGVVFTIYNASTGKVEIINARETVPASYDQGLLNQCKNVLPLGTGAQWIGV
PGELRGYAEAHRRHGRLPWAQLFQPTIALLREGFRVPFILSQFLNNSILRPHLSASTLRQLFFNGTETLR
SQDPFPWPALANTLETVAKEGAEVLYTGRLGRMLVEDIAKQGSLLTVQDLAAFQPEVVEPLEMPLGNYTL
YSPPPPAGGAILSFILNVLKGFNFSAETVARPGGEVNMYHHLVETLKFAVGQRWRLWDPSSHPGIQNISR
DLLREDLAQRIRQQIDGRGDHHQLSHYNLTGVRGNRMGTSHVSVLGEDGSAVAATSTINTPFGAMVYSPR
TGILLNNELLDLCWRHMPTSPITPPPVPGERPPSSMVPSILVNKGQGSKLVIGGAGGELIISAVAQTIMN
KLWLGFDLTEAIASPILHVNSKGHVEYEPKFNQEVQKGLQDRGQIQSQSQRPVFLNAVQAVFQEGPCVYA
ASDLRKAGKASGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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