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Report for CCDS39354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39354.1 Public Mus musculus 5 Tmem184a 23 108 98 CCDS HistoryNCBI Gene:231832Re-query CCDS DB by CCDS ID:39354.1Re-query CCDS DB by GeneID:231832See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110832.7 ENSMUSP00000106456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110832.7Link to Ensembl Protein Viewer:ENSMUSP00000106456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110832Re-query CCDS DB by Protein ID:ENSMUSP00000106456
Original member Current member NCBI NM_144914.3 NP_659163.3 Accepted alive Link to Nucleotide Sequence:NM_144914.3Link to Protein Sequence:NP_659163.3Re-query CCDS DB by Nucleotide ID:NM_144914Re-query CCDS DB by Protein ID:NP_659163Link to BLAST:NP_659163.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659163.3 425 Q3UFJ6 425 100% 0 0

Chromosomal Locations for CCDS 39354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139805482 139805741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139806182 139806376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139806905 139807074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139807620 139807711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139807794 139807869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139807957 139808047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139808357 139808522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139812965 139813192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGAGGAATGCGTCAGGGTTTCTGAAGACAGCCGGAGCCCCCCTCGTGTCAGCGACCTGGCTTCCACCCA
GCCCCCCTCCGGCAATGCCCACAGTGGCAGCCGGGCCACAGATGGAGCGCGTGGACAACGGCTCGCAGGG
GGCCCCCCAGCTCTTCCTCACCAGCGCATTGGCCCGAGGCGTTTCAGGCGTGTTTGTATGGACTGCTCTG
CTGCTAACCGGCCACCAGATCTACTCCCACCTACGTTCCTATACCGCCCCGCGAGAGCAGCGCTTCGTCA
TCCGCCTCCTGTTCATTGTGCCCATCTACGCCTTCGACTCCTGGCTCAGCCTCCTCCTCCTTGGGGGCCA
TCCTTACTACGTCTACTTCGACTCTGTGCGAGACTGCTACGAAGCATTTGTCATCTACAGTTTCCTGACC
TTGTGCTTCCAATATCTGGGGGGCGAGAGCGCCATCATGGCTGAGATCCGAGGCAAACCTATCAGGTCCA
GCTGCTTCTATGGGACCTGCTGCCTCCGTGGTATGTCCTACTCCATCACGTTCTTACGCTTCTGCAAACA
GGCCACACTCCAGTTCTGCATTGTGAAACCCGTTATGGCGCTGATCACCATCATCCTCCAGGCTTTTGAC
AAATACCACGATGGGGACTTCAACATCCACAGCGGCTACCTGTACGTGACCCTCGTGTACAATGCCTCGG
TCAGCCTGGCTCTCTACGCTCTGTTCCTTTTCTACTTCGCTACCAGGGACCTCCTGAGACCCTTCGAGCC
GGTACTCAAGTTCCTCACCATCAAAGCCATCATCTTCCTCTCCTTCTGGCAGGGAATGCTGTTGGCCATC
TTGGAGAGGTGTGGGGTCATCCCTGAGGTCCAGGCCGTGGACGGCACCAGGGTTGGGGCTGGTACCCTAG
CCGCTGGCTACCAGAATTTCCTCATCTGTGTTGAGATGCTGTTCGCCTCCCTCGCGCTGCGTTACGCCTT
CCCCAGCCAGGTGTATTCAGAGAAGAAGAACTCACCAGTCCCGCCAGCACCTATGCAAAGCATATCCAGT
GGCTTAAAGGAGACCATCAGCCCACAGGACATTGTCCAGGACGCCATTCATAACTTCTCGCCAGCCTACC
AGCAGTACACACAGCAGTCCACACATGAAGCTCCTGGGCCTGGCCAGGGTGGGCACCCAGCACCCAGTAC
CCACCCCGGCCCAGCCAGTGGCTCTGGAGGTGGTAAGAAGAGTCGCAACATAGAGAAACGCATGCTGATT
CCCTCAGAGGACCTGTAG

Translation (425 aa):
MRNASGFLKTAGAPLVSATWLPPSPPPAMPTVAAGPQMERVDNGSQGAPQLFLTSALARGVSGVFVWTAL
LLTGHQIYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLLLLGGHPYYVYFDSVRDCYEAFVIYSFLT
LCFQYLGGESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFD
KYHDGDFNIHSGYLYVTLVYNASVSLALYALFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAI
LERCGVIPEVQAVDGTRVGAGTLAAGYQNFLICVEMLFASLALRYAFPSQVYSEKKNSPVPPAPMQSISS
GLKETISPQDIVQDAIHNFSPAYQQYTQQSTHEAPGPGQGGHPAPSTHPGPASGSGGGKKSRNIEKRMLI
PSEDL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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