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Report for CCDS26748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26748.1 Public Mus musculus 13 Ppwd1 23 108 98 CCDS HistoryNCBI Gene:238831Re-query CCDS DB by CCDS ID:26748.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022226.5 ENSMUSP00000022226.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022226.5Link to Ensembl Protein Viewer:ENSMUSP00000022226.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022226Re-query CCDS DB by Protein ID:ENSMUSP00000022226
Original member Current member NCBI NM_172807.4 NP_766395.2 Accepted alive Link to Nucleotide Sequence:NM_172807.4Link to Protein Sequence:NP_766395.2Re-query CCDS DB by Nucleotide ID:NM_172807Re-query CCDS DB by Protein ID:NP_766395Link to BLAST:NP_766395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766395.2 646 Q8CEC6 646 100% 0 0

Chromosomal Locations for CCDS 26748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104205504 104205647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104207099 104207281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104207997 104208078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104209614 104209795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104213526 104213715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104217089 104217279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104220037 104220484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104222838 104222958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104223092 104223192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104225350 104225452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104228606 104228801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGCGACCGAGAGTGGGAGCGATTCGCAGCTGAGGAGGAGAAGGCGCCGAGACCCAGAGGGATCAGAAA
AAACGGAACTGAGCGAGCGAGAACCGGCCCTGGCAGTGGCGGGGAGCGAAGAAAATGATGATGAGAATGA
AGAGCGCTGGGTCGGGCCTTTACCGGTGGAGGCAACCCTTGCCAAGAAGAGGAAAGTTCTGGAGTTCGAA
AGAGTCTACCTTGATAATCTCCCCAGTGCATCCATGTATGAGCGCAGTTACATGCACAGAGATGTTATCA
CACATGTGGTATGTACCAAAACAGATTTTATTATCACTGCCAGTCATGATGGACATGTTAAATTTTGGAA
AAAAATAGAAGAAGGAATTGAGTTTGTTAAACATTTTCGTAGTCACCTTGGAGTTATTGAGAGTATTGCA
GTTAGCTCTGAGGGAGCGTTGTTCTGCTCTGTCGGTGATGATAAAGCGATGAAGGTGTTTGATGTGGTGA
ACTTTGACATGATCAACATGCTGAAGCTCGGCTATTTTCCTGGACAGTGTGAGTGGATATATTGCCCAGG
AGATGCCATATCTTCAGTTGCTGCTTCTGAGAAGAGTACAGGAAAAATTTTCATTTATGATGGACGAGGA
GATAACCAGCCACTTCATATTTTTGACAAACTCCATGTATCCCCTCTTACTCAAATAAGACTAAACCCAG
TTTACAAAGCAGTGGTGTCTTCTGACAAATCCGGGATGATTGAGTACTGGACTGGACCGCCGCACGAATA
TAAGTTCCCTAAAAATGTGAACTGGGAGTATAAGACAGACACAGACTTATATGAATTTGCCAAGTGTAAG
GCATATCCAACCAGCATATGTTTTTCACCTGATGGGAAGAAAATAGCAACCATTGGATCAGACAGAAAAG
TTAGAATTTTCAGGTTTTTAACTGGAAAACTCATGAGGGTCTTTGATGAATCATTAAGTATGTTTACTGA
ACTGCAGCAGATGAGGCAACAACTACCAGACATGGAATTTGGCCGACGAATGGCTGTAGAACGTGAGCTG
GAGAAAGTGGATGCTGTAAGATTAGTTAACATCGTTTTTGATGAAACCGGACACTTCGTGCTGTACGGAA
CGATGCTGGGCATTAAAGTAATAAATGTAGAAACGAATCGGTGTGTGCGGATCTTAGGCAAGCAAGAAAA
CATTAGAGTGATGCAGCTAGCTTTGTTTCAGGGAATAGCCAAAAAGCATCGAGCTGCAGCTACCATAGAG
ATGAAAGCTTCTGAAAATCCTGTTCTTCAGAATATTCAAGCTGACCCAACAATAGTCTGTACATCTTTCA
AAAAGAATCGCTTTTATATGTTTACCAAACGAGAGCCGGAAGATACAAAAACTGCAGATTCTGACAGAGA
TGTTTTTAATGAGAAACCTTCTAAAGAAGAAGTCATGGCAGCTACTCAAGCTGAAGGGCCGAAGCGAGTT
TCAGATAGTGCCATTGTCCACACAAGCATGGGAGACATTCACATCAAACTTTTTCCTGTTGAGTGTCCCA
AGACTGTGGAAAACTTCTGTGTTCATAGCAGAAATGGTTATTACAATGGGCATACATTCCACCGTATAAT
TAAGGGCTTCATGATTCAGACAGGAGATCCAACAGGTACTGGTATGGGGGGCGAAAGCATATGGGGAGGA
GAGTTTGAGGACGAATTCCACTCAACATTACGACATGACAGACCGTACACACTCAGCATGGCCAATGCTG
GATCAAATACCAACGGATCCCAGTTTTTTATAACAGTAGTACCAACGCCTTGGCTTGATAATAAGCACAC
GGTGTTTGGAAGAGTGACTAAAGGCATGGAGGTTGTGCAGAGGATTTCTAACGTTAAAGTCAACCCCAAA
ACCGATAAGCCTTATGAGGACGTCAGCATCATAAATATCACTGTCAAGTAA

Translation (646 aa):
MATESGSDSQLRRRRRRDPEGSEKTELSEREPALAVAGSEENDDENEERWVGPLPVEATLAKKRKVLEFE
RVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIA
VSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRG
DNQPLHIFDKLHVSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCK
AYPTSICFSPDGKKIATIGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVEREL
EKVDAVRLVNIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAAATIE
MKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKTADSDRDVFNEKPSKEEVMAATQAEGPKRV
SDSAIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGG
EFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPK
TDKPYEDVSIINITVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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