NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53115.1 Public Mus musculus X Cldn34b3 23 108 98 CCDS HistoryNCBI Gene:238829Re-query CCDS DB by CCDS ID:53115.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096389.4 ENSMUSP00000094120.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096389.4Link to Ensembl Protein Viewer:ENSMUSP00000094120.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096389Re-query CCDS DB by Protein ID:ENSMUSP00000094120
Original member Current member NCBI NM_001013760.3 NP_001013782.1 Accepted alive Link to Nucleotide Sequence:NM_001013760.3Link to Protein Sequence:NP_001013782.1Re-query CCDS DB by Nucleotide ID:NM_001013760Re-query CCDS DB by Protein ID:NP_001013782Link to BLAST:NP_001013782.1

Chromosomal Locations for CCDS 53115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 76266828 76267457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGCCATTGAAAAAGTGCCATCGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCT
GCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAGATCCTGTGATCCTCAAGCCTACAGT
GGCTTTAGTGGGCATGTGGAGAGCCTGCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGT
TACCAATACAAATACGATGGCTCCATTCATTTATATATTCAAGTAAACCAGCACTTGCTGCTGGTTTCTA
GCTTTCTTGGTCTTTTTGGGAAAATCACCACCATTATTGCTCTTTCGAATGTGCATATGGGAAGAGTACG
GAGGAATGCCACCTGCAATCCATTTAGACTTTCAGGCATACTGAACATCATTGCTAGCAGCTTTCTTTAC
CTTGCTGTTTTGTTCAATTACATAGCCATCATGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATT
TGCCTTTCCAGCCAGACATTCGGAAGATGGGAAGTGCCACGGCTTTGGCAATTATAGCTGCAGTTTTCTT
TCTACTAAGTGGCACAATTTGCCTTTCTTCAAATTTAGCCATAGGCAAGGTGCCCCATTCCAAAATGTAA

Translation (209 aa):
MPLKKCHRQMGGFALTTVAWLLCCISTGLPQWQVWHYEDPVILKPTVALVGMWRACIFHTDSNSSNTRVC
YQYKYDGSIHLYIQVNQHLLLVSSFLGLFGKITTIIALSNVHMGRVRRNATCNPFRLSGILNIIASSFLY
LAVLFNYIAIMSKWGIAFPPSFNLPFQPDIRKMGSATALAIIAAVFFLLSGTICLSSNLAIGKVPHSKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH