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Report for CCDS49285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49285.1 Public Mus musculus 13 Spata31d1b 23 108 98 CCDS HistoryNCBI Gene:238662Re-query CCDS DB by CCDS ID:49285.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165133.2 ENSMUSP00000130813.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165133.2Link to Ensembl Protein Viewer:ENSMUSP00000130813.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165133Re-query CCDS DB by Protein ID:ENSMUSP00000130813
Original member Current member NCBI NM_001167593.1 NP_001161065.1 Accepted alive Link to Nucleotide Sequence:NM_001167593.1Link to Protein Sequence:NP_001161065.1Re-query CCDS DB by Nucleotide ID:NM_001167593Re-query CCDS DB by Protein ID:NP_001161065Link to BLAST:NP_001161065.1

Chromosomal Locations for CCDS 49285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 59712315 59712500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59713636 59713675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59714135 59714195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59715327 59719125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4086 nt):
ATGGAGAAGATTCTCTCAGCTCTGAATGGCCTCAGTGAGACATGGCTGACCCTAGGCTCAGCTTCCTACC
ACATAGACCTCAACTACACTCTTCTGAGTGGACTGGGGCTACTGCTTCTGTACATCTCCTACCTGATATT
AAAACTGCTTATACACTTGCTGTGGAGAGAGAAATACACCCCAAAGCTATGGGAGAAAGGGAAGAAGAGA
AGGCAAACCCTCAAAGGTGGGCGAGCTTGCCAGAGAGAAGCGGCGCAGAGGAGGGAGCTGCAGACAACCC
AGCCAAGCTCTCTGGAAGAGCCCTCTGAGGCCTCCTGCAATGAACTACCACTCCACAGAGATCCCCTCTT
GCCTGTGTGTGATAGATCTGGCAATATCAGTCATCAGCTCTCCCAGGACCACCTCAAAGATGGTAAAGCC
TCTTACTTGTGCGTGGCTTCCACAGTTCCTGGGACGGAGGCCTCGTTTGTTCTGTCCTCTCTGCTCACAG
GAAACCAGGCAGGGCATTCGGCTCCAGCCCTTCTACCGGAGCCTTTACCGCTGGCTCCGTCCATCCTTTC
ACCTAACTGCTTTGCCCCCCTAGAAGGCTTCTACTCAGCCACACTGCTGCACGACTCTCTGACACCAGAG
TCCACACTTCCCTTGAACCCTTCACTTCTCCCGGACCCCACCCCACCCTATCCACTTGCCTCTTTTCCTC
TTCCAACAAGAGAAGTGCAGAAGTCAGAAGTGGTCTTCCAACTGGAAACCATGAGATCTCTGGTGGACAG
ACTCAATGAGATGCCCACTAATGTCCCACCAGCCCAAGGCACTGGCTGTGTAAGACAAACAATGCCAGAG
GCCCCCCAACAGCAGCCTGCTGCTGACAACCAATTATCTTCAGACTCAAAAAACCAGTATCTCCCAGCTC
CTCATGTTCCTCAAGTCCCTTTGCAGGGAGACACAAGGGCCTGCCATGTAGAGCCTGGATACCTCTTTTT
TCCCAACTCTAATGCCGTGAAACTGTTCCAAAGGCTAGACAAGAAAGTGAGTGATTTCCTGATGGTGAAG
GGGGAGCAGGAGGAGTGGGAGGAGGAAGAGGACAAAGGATGTTTTATAAAGTCACCCAGTTCTTCGGAGA
AGCTGCTATCAGGAGAGACATCGGGTGAGCCACAGGATTTTGTGGCTTCTCATTCGTCAAGCAGCAAAGG
CAAGCTCACGCACCAGCCGCTCCCTCACTCCAAGACTTTTGAAGACCATGAGGAGCTTCAGTCTTCCCTG
CTCTTCTGGGGGCCCCCCTCTCTACACAGTGAGGCCCTGAGCCCTACTACCACTAACGCCTATGACCGTT
CCTCAGCATTGGTCTGCTTCAACAGCATGGCTGAGGCCTCCATTGCTGACTACTCTCATGGCTGTATGCT
TCCCACACCTTTGCATGCATATCAACCACAGACATGGCTACAGACCGAACCCCAGTCCCATCCCCAACGT
GACCCTCCTGCCGAGTTGCAGCCTCAGCCTCAACCCCAATCCCGGGTCTCAATCTTGACATTTTCTCATC
AATCCGAGCCTCGAGACTGTGGGGTGCATTTTCACAGACCCCAGGGAGACGAGCAGCTTCTCAGTTCTTC
TGAGATGCAGTGCTTGGAATACAACATCTTGAAAAAGGAACAGGAGAGGGTCTGGGGTTTACCCCTCATG
GTCAAAAAGTCCAAGTATACTTTTTGTCCCTCACCTCCCAAGGTCTTGTTGGGAAGTCGCTCCTCCAAGG
CCTGTACTCCCAGGCCCATCCTTCCTGGAGACTTCCCCCTCACCAGTGAGCTCCAGAAGAAACTTGAACA
CCATCTCCGAAAGAGACTCATCCAACACCGCTGGGGCCTGCCCGACAGGATCGACAAGTCCCTGTCACTC
ATGAGTCCCCAGTCAGAACTGATCGACTTCTCTGAGTCAAAAAAGAACCGGGGACTCTCTTGGATCACTT
TCTTTAAGTACCAAGGCAACAAAGACTCTCAGGTCTTATCTGGAGGTAGCTCTCGAAATCGGATGCCTAG
AAGGCATTCTCTACGGGAGACTAGGGTCAAAGAACGAACATATAGTCAAGATAGGGGCCACAATGACCAA
TCCTGGGGTAACAACTTTCAGGAGGCTTCACAAAACAGTGTGCAGTCTCACTTGAAGACACACCGGAAGA
GTCGTATGGGCAGGCAGCCTCCCAGGTTTTCAAGCCCCTCACAGGTGAAACAGTACCAGAGAGGAATTGA
AAAAGCCCTGGAAAAACACCTGAACAAGAAAATTAGGGAAATCAGCAGGGGTGAGATCCCTACCACAGTG
GATAGGTCGAGGCATTCTGTGAACATGGCAAACATAGCGCAGCCTCCACCAGAGACCTCGCCCAAACGAA
TGAAAGATCTGGCACCAATGGCATGTAAGGAGCACATGCTGACGAGGCACCCCCACAGCTTAGCGCTTAG
TCCTAGCAAAGAGAAGATGCTGGAAGAACACATCACCACCTTCCGCAGAAGGATGGCATTTGGCCTCCCA
CAAAGGGTTGAGGAGTCCTTAGAGTCTTACTCGACAAAAGCAGAGCCTTCTCAGCCTTTCCCTCAGCTCC
ACGTTCAAGCCCACAACGTTTCTAGAGCAGACCCTGCCAAGTCCTCCAGGTCCCTCCGGAGAACAACTAC
TGGAGATAGAATGGGGACAATGACTTCAGTCCCCACCCAACAGAGGCCTCTTCCTGCTGCCTCGCTGGTG
GGCCACAGCCAGCCAGCCTCTGAGAACAAGAAGGTGGGTGTAGATAGAGACCTTAGCGTAACCCCAAGGG
GCAGAGAGCCAACCCAGCACTGGACACCCAGGAGGGCAGACAAAGGTGACGTGCAGCAGTCTGGATCACA
CAACAGACCTGGCCCAGAGCTGCCCATGAGCCCAGGTGGGCCAACATATGAGAGACTGGCTTCCAGCACC
AACACACAGGAGTCTCAGGAAGAAAGGAGGAGCCGGGAAGACGGCTCCGAGGCTGAGGGCTCCACAGAGC
TACACAAGGGAGAGCAACTCCCGGGTCTTCACCCACAGTCCACTAAGAGCTTGAAAGGCACCCAAGGCCT
GTGCTCCCCAGGGAGCCCTGTGACTGCATGTCAGTCCCCGCAGGGAATGTCATTTCTCCACAACTCTGAG
AGCCCTGACTCTAAAAGTCAGGTGTCCACAGAAGTTCAGCTGAACTCAGAGGGCGGGACACACAACCAAG
TGCCAGACCTGCCTGCCACGCCCTTTGCCCCACAAGAAATGACTTCCAAACCCCAGGGCCCCTCCGGTGG
GGACATGGCAGTTTCTCAGGTGCTGCGTGTGCACATGCCCACTGTGGGCATCAGCATGGAGTCGAGGCAG
GGTCCCTGGGTCCCTGCATATGTCTCAGGCAAGAGCAAGAACAAGGACTGTCTCCCTGCTGCCAGGGGAT
TGCCACAGCTGGCAACTGAGGCAGGAAAGTTTGGGGGAGGGGATGCAGGCTTAGGGACATCCCAGACCAC
AGGGAAGGGACACTGTGTTCAGGCCAGGGCACCAGAGGAGACACAAGGACTCACAGCCTCCCCAGCACTG
ACACCTAAGAGTCAGCCTCAGGAAAATCAGTTCACCAGCCAGGTGAAGGGCTTCTGGCAGAGGCTGTCCC
CTGGGAAGAAACACAAAGGACAGGAAAAGTCCCTGGCCAAGGGCTGCTCTCCATTAGCATCTGGGAAGGG
CACAAGCCCCATCAAAGGGAGAAGTGAGTTTTGTGGGAACCCTGAAGCTCAGAACTGTGTGAGGGAGCCT
GGGATGGTCCTGAGGAAGCAGCTGGGGCACAGGCATGGGACAGTCACCCCCTGCCCCCAGGTCCCTGTGT
CTCCCCTCATGGGGTCTGAAGGAGCTCAGCAGGAGGTGCCCCTGCAGGCTCAGGCAGAGCCTGTCCAGAG
GCTGCCCCACTTGTGCTGCAGAGGTTCCTGCTCTCCAGTGCCAAGGGCTGAGTCCTGCAGCCCAGGACAG
GGGCAGACAGCCCCTGAGAGGTGTGGCCCTACAGGAAAAGCTAAGAGGGTGGAGACCTCCCCTGTGCTTG
CTTCTCCACCAAAGTCCTCTCTGTAG

Translation (1361 aa):
MEKILSALNGLSETWLTLGSASYHIDLNYTLLSGLGLLLLYISYLILKLLIHLLWREKYTPKLWEKGKKR
RQTLKGGRACQREAAQRRELQTTQPSSLEEPSEASCNELPLHRDPLLPVCDRSGNISHQLSQDHLKDGKA
SYLCVASTVPGTEASFVLSSLLTGNQAGHSAPALLPEPLPLAPSILSPNCFAPLEGFYSATLLHDSLTPE
STLPLNPSLLPDPTPPYPLASFPLPTREVQKSEVVFQLETMRSLVDRLNEMPTNVPPAQGTGCVRQTMPE
APQQQPAADNQLSSDSKNQYLPAPHVPQVPLQGDTRACHVEPGYLFFPNSNAVKLFQRLDKKVSDFLMVK
GEQEEWEEEEDKGCFIKSPSSSEKLLSGETSGEPQDFVASHSSSSKGKLTHQPLPHSKTFEDHEELQSSL
LFWGPPSLHSEALSPTTTNAYDRSSALVCFNSMAEASIADYSHGCMLPTPLHAYQPQTWLQTEPQSHPQR
DPPAELQPQPQPQSRVSILTFSHQSEPRDCGVHFHRPQGDEQLLSSSEMQCLEYNILKKEQERVWGLPLM
VKKSKYTFCPSPPKVLLGSRSSKACTPRPILPGDFPLTSELQKKLEHHLRKRLIQHRWGLPDRIDKSLSL
MSPQSELIDFSESKKNRGLSWITFFKYQGNKDSQVLSGGSSRNRMPRRHSLRETRVKERTYSQDRGHNDQ
SWGNNFQEASQNSVQSHLKTHRKSRMGRQPPRFSSPSQVKQYQRGIEKALEKHLNKKIREISRGEIPTTV
DRSRHSVNMANIAQPPPETSPKRMKDLAPMACKEHMLTRHPHSLALSPSKEKMLEEHITTFRRRMAFGLP
QRVEESLESYSTKAEPSQPFPQLHVQAHNVSRADPAKSSRSLRRTTTGDRMGTMTSVPTQQRPLPAASLV
GHSQPASENKKVGVDRDLSVTPRGREPTQHWTPRRADKGDVQQSGSHNRPGPELPMSPGGPTYERLASST
NTQESQEERRSREDGSEAEGSTELHKGEQLPGLHPQSTKSLKGTQGLCSPGSPVTACQSPQGMSFLHNSE
SPDSKSQVSTEVQLNSEGGTHNQVPDLPATPFAPQEMTSKPQGPSGGDMAVSQVLRVHMPTVGISMESRQ
GPWVPAYVSGKSKNKDCLPAARGLPQLATEAGKFGGGDAGLGTSQTTGKGHCVQARAPEETQGLTASPAL
TPKSQPQENQFTSQVKGFWQRLSPGKKHKGQEKSLAKGCSPLASGKGTSPIKGRSEFCGNPEAQNCVREP
GMVLRKQLGHRHGTVTPCPQVPVSPLMGSEGAQQEVPLQAQAEPVQRLPHLCCRGSCSPVPRAESCSPGQ
GQTAPERCGPTGKAKRVETSPVLASPPKSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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