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Report for CCDS38909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38909.1 Public Mus musculus 4 Cd52 23 108 98 CCDS HistoryNCBI Gene:23833Re-query CCDS DB by CCDS ID:38909.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38909.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000696.6 ENSMUSP00000000696.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000696.6Link to Ensembl Protein Viewer:ENSMUSP00000000696.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000696Re-query CCDS DB by Protein ID:ENSMUSP00000000696
Original member Current member NCBI NM_013706.2 NP_038734.1 Accepted alive Link to Nucleotide Sequence:NM_013706.2Link to Protein Sequence:NP_038734.1Re-query CCDS DB by Nucleotide ID:NM_013706Re-query CCDS DB by Protein ID:NP_038734Link to BLAST:NP_038734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038734.1 74 Q64389 74 100% 0 0

Chromosomal Locations for CCDS 38909.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134093727 134093900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134094934 134094984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGAAGAGCTTCCTCCTCTTCCTCACTATCATTCTTCTGGTTGTGATTCAGATACAAACAGGATCCTTGG
GACAAGCCACTACGGCCGCTTCTGGTACTAACAAAAACAGCACCTCCACCAAAAAAACCCCCTTAAAGAG
TGGGGCCTCATCCATCATCGATGCGGGTGCCTGCAGTTTCCTCTTCTTTGCCAATACCTTAATGTGCCTC
TTCTACCTCAGCTGA

Translation (74 aa):
MKSFLLFLTIILLVVIQIQTGSLGQATTAASGTNKNSTSTKKTPLKSGASSIIDAGACSFLFFANTLMCL
FYLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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