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Report for CCDS49118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49118.1 Public Mus musculus 12 Vash1 23 108 98 CCDS HistoryNCBI Gene:238328Re-query CCDS DB by CCDS ID:49118.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021681.3 ENSMUSP00000021681.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021681.3Link to Ensembl Protein Viewer:ENSMUSP00000021681.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021681Re-query CCDS DB by Protein ID:ENSMUSP00000021681
Original member Current member NCBI NM_177354.4 NP_796328.2 Accepted alive Link to Nucleotide Sequence:NM_177354.4Link to Protein Sequence:NP_796328.2Re-query CCDS DB by Nucleotide ID:NM_177354Re-query CCDS DB by Protein ID:NP_796328Link to BLAST:NP_796328.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796328.2 375 Q8C1W1 375 100% 0 0

Chromosomal Locations for CCDS 49118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86679988 86680326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86685384 86685472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86686966 86687022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86688212 86688286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86688902 86689283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86690858 86690970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86691836 86691908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGCCAGGGGGAAAGAAGGTGGTCCCAAGTGGCAGCAGCAGTGCCTCCCCGAACGCAGCCGCCACCACCA
CTGCTGCTGCTGCTGCTGCCGCTGCTGCCCCCCACTCTGGCACTAAACGTTTGGAGACCACCGAAGGGGC
CTCAGCACAGAGAGATGAGGAACCCGAAGAGGAAGGGGAAGAGGACCTACGAGATGGAGGTGTCCCTTTT
TTCATCAACCGAGGTGGACTGCCAGTGGATGAGGCCACCTGGGAAAGGATGTGGAAGCATGTGGCCAAGA
TCCACCCAGATGGAGAGAAGGTGGCCCTGCGCATCCGTGGGGCCACCGACCTGCCCAAGATTCCCATACC
AAGTGTGCCTACTTTCCAGCCGACGACGCCCGTCCCTGAGCGCCTGGAAGCCGTGCAGCGCTACATCAGG
GAGCTGCAGTACAATCACACAGGGACACAATTCTTTGAAATTAAGAAGAGCAGACCTCTGACGGGGCTGA
TGGACCTGGCCAAGGAAATGACCAAAGAGGCTCTGCCAATCAAATGCCTGGAAGCTGTGATCCTGGGAAT
TTACCTCACCAACAGTATGCCCACCCTGGAACGCTTTCCCATCAGCTTCAAGACCTATTTCTCAGGGAAC
TACTTCCGCCACATTGTGCTGGGGGTGAACTTCGGGGGCCGCTATGGCGCCCTGGGTATGAGCCGAAGGG
AGGACCTGATGTACAAACCGCCCGCCTTCCGCACGCTCAGTGAGCTCGTGCTGGACTACGAAGCGGCCTA
CGGCCGCTGCTGGCACGTGCTGAAGAAGGTGAAGCTGGGTCAGTGTGTGTCCCACGACCCGCACAGTGTG
GAACAGATTGAATGGAAGCACTCGGTGCTGGATGTGGAGAGGCTGGGGCGGGAAGACTTCCGCAAGGAGC
TGGAGCGTCATGCCCGAGACATGCGGCTCAAGATTGGCAAGGGGACAGGCCCTCCTTCTCCCACCAAGGA
CCGGAAGAAGGATGTTTCCTCCCCACAGAGGGCCCAGTCCAGCCCCCATCGCAGGAACAGCCGCAGTGAG
AGACGGCCTTCAGGGGAGAAGAAGCCCGCAGAGCCCAAAGCCATGCCAGACCTCAGTGGGTACCAGATCC
GGGTGTGA

Translation (375 aa):
MPGGKKVVPSGSSSASPNAAATTTAAAAAAAAAPHSGTKRLETTEGASAQRDEEPEEEGEEDLRDGGVPF
FINRGGLPVDEATWERMWKHVAKIHPDGEKVALRIRGATDLPKIPIPSVPTFQPTTPVPERLEAVQRYIR
ELQYNHTGTQFFEIKKSRPLTGLMDLAKEMTKEALPIKCLEAVILGIYLTNSMPTLERFPISFKTYFSGN
YFRHIVLGVNFGGRYGALGMSRREDLMYKPPAFRTLSELVLDYEAAYGRCWHVLKKVKLGQCVSHDPHSV
EQIEWKHSVLDVERLGREDFRKELERHARDMRLKIGKGTGPPSPTKDRKKDVSSPQRAQSSPHRRNSRSE
RRPSGEKKPAEPKAMPDLSGYQIRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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