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Report for CCDS63612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63612.1 Public Homo sapiens 3 CCDC12 24 110 108 CCDS HistoryNCBI Gene:151903Re-query CCDS DB by CCDS ID:63612.1Re-query CCDS DB by GeneID:151903See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 63612.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292314.6 ENSP00000292314.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292314.6Link to Ensembl Protein Viewer:ENSP00000292314.2Re-query CCDS DB by Nucleotide ID:ENST00000292314Re-query CCDS DB by Protein ID:ENSP00000292314
Original member Current member NCBI NM_144716.6 NP_653317.2 Accepted alive Link to Nucleotide Sequence:NM_144716.6Link to Protein Sequence:NP_653317.2Re-query CCDS DB by Nucleotide ID:NM_144716Re-query CCDS DB by Protein ID:NP_653317Link to BLAST:NP_653317.2

Chromosomal Locations for CCDS 63612.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46922057 46922139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46922236 46922312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46923329 46923363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46923607 46923668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46925456 46925535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46940998 46941065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46976637 46976771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGCAAGACGGGAGAAAAGGAGGGGCGTACGCGGGCAAGATGGAGGCAACTACGGCTGGTGTGGGCCGGC
TAGAGGAAGAGGCGTTGCGGCGAAAGGAACGGCTGAAGGCCCTACGGGAGAAAACCGGGCGCAAGGACAA
GGAAGATGGGGAGCCAAAGACCAAGCATCTCAGAGAAGAGGAGGAAGAAGGCGAGAAGCACAGGGAACTT
AGGCTGCGGAACTATGTCCCGGAGGATGAGGACCTGAAGAAGAGGAGGGTGCCCCAGGCCAAACCGGTTG
CAGTGGAGGAGAAGGTGAAGGAGCAGCTGGAGGCCGCCAAGCCCGAGCCCGTCATCGAGGAGGTGGACCT
GGCCAACCTCGCTCCTCGGAAGCCTGACTGGGACCTCAAGAGAGATGTGGCCAAGAAGCTGGAGAAACTA
AAAAAGCGGACTCAGAGGGCCATTGCCGAGCTGATCCGTGAAAGGCTGAAAGGCCAGGAAGACAGCCTAG
CCTCTGCAGTGGATGCTGCCACCGAACAAAAGACCTGTGACTCCGACTGA

Translation (179 aa):
MQDGRKGGAYAGKMEATTAGVGRLEEEALRRKERLKALREKTGRKDKEDGEPKTKHLREEEEEGEKHREL
RLRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL
KKRTQRAIAELIRERLKGQEDSLASAVDAATEQKTCDSD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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