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Report for CCDS70269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70269.1 Public Mus musculus 11 Slfn14 23 108 98 CCDS HistoryNCBI Gene:237890Re-query CCDS DB by CCDS ID:70269.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163961.2 ENSMUSP00000139132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163961.2Link to Ensembl Protein Viewer:ENSMUSP00000139132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163961Re-query CCDS DB by Protein ID:ENSMUSP00000139132
Original member NCBI NM_001166028.1 NP_001159500.1 Updated not alive Link to Nucleotide Sequence:NM_001166028.1Link to Protein Sequence:NP_001159500.1Re-query CCDS DB by Nucleotide ID:NM_001166028Re-query CCDS DB by Protein ID:NP_001159500
Current member NCBI NM_001166028.2 NP_001159500.1 Accepted alive Link to Nucleotide Sequence:NM_001166028.2Link to Protein Sequence:NP_001159500.1Re-query CCDS DB by Nucleotide ID:NM_001166028Re-query CCDS DB by Protein ID:NP_001159500Link to BLAST:NP_001159500.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159500.1 899 V9GXG1 899 100% 0 0

Chromosomal Locations for CCDS 70269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83275988 83276810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83278940 83279654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83281819 83281953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83283137 83284163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2700 nt):
ATGCCCTACGCGGAGATCACCGTGAATCTGGGCAAAGTGACGCTGGGAGAAGAGAACAGGAAGAAGATGA
CCAACAGTTGTTTGAAAAGGCATGAGAACTCGAGTCTCGTCCAGGCTGTGTGCGCACTGCTGAATTCTGG
GGGAGGTGTGATCAAAGCCGAGATCAATGACAAAAGCTACAGTTACCGATGCCACGGGCTGGGGCAGGAT
CTGGAAACTTCCTTTCAGAAGCTCCTCCCATCGGGGTCACAGAAGCACCTGGACTACATGCAACAGAACC
ACGACCTCCTGATTTTTGTAAAGTCATGGAGCCCAGATGCGTCCAGCCTTCCACTGAGGATTTGCAGCTT
ACGCTCCAATTTATATCAGAGAGATGTGACCTCAGCCATCAACTTGTGCGCCAACGGTGCCCTAGAGCTT
CTCAGAGAGAAAGAGTCTAGAGCCCAAAGAGGTACCCCTAGGCTACATTCTCAAGACCACATCCTCAACA
GAACCATTCAGGAAGAGGAAGATATTAAGATGTGTGCCTTGGAATTTTTAAAAAAAGATAAACTCAATTT
TAAGGAGAAGCTTAGCTTCACAGAGTCAACTCACGTTGAGTTTAAAAGGTTTACCACCAAAAAGATTGTC
CCTCGGATTAAAGAGACACTGGCTCATTATGTTTCTGCATTTGCCAATACTCAGGGGGGATACATAATTA
TTGGGGTTGATGATAAGAGCAAAGAAGTGTTTGGATGTAAGAAAGAAAAAGTGAACCCCGACTCACTAAA
AACAGAAATAAAAAACTGCATAGAAAAGTTGCCCACATACCACTTCTGTCGTGAAAAGCCCAAGGTGAAT
TTCACAACTAAGATTTTGAAAGTTTATCAAAAAGAGGCCCTGTATGGTTTTGTCTGTGTTGTTCAAGTAG
AGCCCTTCTGTTGTGTCGTGTTTGCAGAGGACCCAGATTCCTGGATCATGGAGAACAATATTGTCACAAG
GCTGAAGGTTCAACAGTGGGTGGAAATGATGCTGGACATTCAGTCAGATCCTTCTTCAGGCTTTCCCACC
ATCAATGACAGTGCTCACCTGATGACACCAGCTTTGTCTGCACCAAGAAGACCAGCGTATCTCACAAAAG
TCCTGGAACATAAGGAAACTCTGCAGCGCCATTTCTTTTCAGTGACACAAGAAAACCTACAATTTCAGCC
AGAATCCCTCTGTAAGAAGCTGTTCTCAGATCACGAAGGACTGGAAGACTTACTGAAGGCACAGACACAC
CCTTGTTCTCACGGCATTGTGATATTTTCGAGAAGCTGGGCTGGCGATATTGGTTTAATGAGAGAAGAGA
AGGTCCTATGTGATGCACTCCTGGTAGCAGTTGGCAGCCCTCTGGTACTCTATACAATCCTAACAGACCC
CAGTTCGACTGGAAGAGCCGACTATACTCAAAACACCGCCCTTCAGTTAAAGAGGCAGCTACAAACTCTT
GGAGGCTACCCAGGGAAAATATGTGTCATTCCAAGGGTGATATACCTGGCCAGCAGAGGGTCCAGACCTG
ATCAACCCCCTGTGTACTACCCCAGACCCTACACACTGTCCAGCAAAGCTGAAGTGGAGGATTTGCTACA
GGGCCTGGTGTTGGTCTCACTGTGTTCCAGATCTGTGCTGAGTGACCAGCTAGGCTGTGAGTTCTTCAAG
CAGTGCTTAGAAGAGCAAGCCAACACACTCTCCAGGAACCTCCAGGAAAGCCGGGAACTGTTCATCCATT
GCCTTCCTGGAACCAGGAAGACAGCTCTTGCCATAAAGATGGTGGAGAAAATCAAGGATGTGTTCCACTG
CAAACCAAAAGAGATCCTCTTTGTTTGTGAAAATGACTCCCTAAGGGATTTTGTGATGCAGCAAGTCACC
TGCCGAGCTGTGACCCGCAGGACCTTCATGAGGGAAGAGTTCCCAAAGATTAAACACATAGTGATGGATG
AGACTGAGAACTTCTGCAGTAGACATGGTGACTGGTACGTGAAGGCTAAGAGCACCACCCATCCAAAAGC
AAACGGGGCTGCAAATGAACACCCTCACCACGGGATCCTCTGGCTTTTTCTGGATCCTTTCCAAGTTCGG
CACGCAGATGGTAGTGGCCTTCCAGTTCCTTCTGCTCAGTTTCCTCGGAAAATGATCACCAGTGAGATCC
ACTGTGCTGTGGAAATTGCTAAGGTCATGAAAGATGAAATGAAGAGGATGCAAGAAAACCCTCCCTCCAT
GGGCCTTCCAGACACCCTGGCAACGTTCCAGGAGGCTCCCTATGAGGAAGCAATGCGTGCTGGGGCTTTG
CCTGGCGTGTGTGAGATCAAGGCTAACCTGACACCAGAACAAATAGCCAACTATGTGGCAGAAAAATGTC
ACAGCCTGTTTCATGAGGGCTATCTGCCCCAAGACATAGCAATTCTGTACAGGAGACGAGAAGACAGAGG
ACAGTATAAGGATGTGTTGCTAAAAGCAATGGCCCGTGGGACAACGGAGGTCGCCTTCAACAGCGCTGCT
GATGTTTGTGCTGATGGCATCATTTTAGACAGTGTAGAACAGTTCTCAGGCATGGTAAGGAATATTGTGT
TTGGGCTTTGCCCTGAATCTGTGCACTCAGAAGGCGTTCATAAACTCTGCTTTGCCTCAAAAGCCATTAA
ACACCTCTACCTGCTGTATGGAGGAAGGACAGCTTTTTAA

Translation (899 aa):
MPYAEITVNLGKVTLGEENRKKMTNSCLKRHENSSLVQAVCALLNSGGGVIKAEINDKSYSYRCHGLGQD
LETSFQKLLPSGSQKHLDYMQQNHDLLIFVKSWSPDASSLPLRICSLRSNLYQRDVTSAINLCANGALEL
LREKESRAQRGTPRLHSQDHILNRTIQEEEDIKMCALEFLKKDKLNFKEKLSFTESTHVEFKRFTTKKIV
PRIKETLAHYVSAFANTQGGYIIIGVDDKSKEVFGCKKEKVNPDSLKTEIKNCIEKLPTYHFCREKPKVN
FTTKILKVYQKEALYGFVCVVQVEPFCCVVFAEDPDSWIMENNIVTRLKVQQWVEMMLDIQSDPSSGFPT
INDSAHLMTPALSAPRRPAYLTKVLEHKETLQRHFFSVTQENLQFQPESLCKKLFSDHEGLEDLLKAQTH
PCSHGIVIFSRSWAGDIGLMREEKVLCDALLVAVGSPLVLYTILTDPSSTGRADYTQNTALQLKRQLQTL
GGYPGKICVIPRVIYLASRGSRPDQPPVYYPRPYTLSSKAEVEDLLQGLVLVSLCSRSVLSDQLGCEFFK
QCLEEQANTLSRNLQESRELFIHCLPGTRKTALAIKMVEKIKDVFHCKPKEILFVCENDSLRDFVMQQVT
CRAVTRRTFMREEFPKIKHIVMDETENFCSRHGDWYVKAKSTTHPKANGAANEHPHHGILWLFLDPFQVR
HADGSGLPVPSAQFPRKMITSEIHCAVEIAKVMKDEMKRMQENPPSMGLPDTLATFQEAPYEEAMRAGAL
PGVCEIKANLTPEQIANYVAEKCHSLFHEGYLPQDIAILYRRREDRGQYKDVLLKAMARGTTEVAFNSAA
DVCADGIILDSVEQFSGMVRNIVFGLCPESVHSEGVHKLCFASKAIKHLYLLYGGRTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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