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Report for CCDS51664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51664.1 Public Mus musculus 5 Ssc4d 23 108 98 CCDS HistoryNCBI Gene:109267Re-query CCDS DB by CCDS ID:51664.1Re-query CCDS DB by GeneID:109267See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111152.7 ENSMUSP00000106782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111152.7Link to Ensembl Protein Viewer:ENSMUSP00000106782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111152Re-query CCDS DB by Protein ID:ENSMUSP00000106782
Original member Current member EBI ENSMUST00000111153.7 ENSMUSP00000106783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111153.7Link to Ensembl Protein Viewer:ENSMUSP00000106783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111153Re-query CCDS DB by Protein ID:ENSMUSP00000106783
Original member NCBI NM_001160366.1 NP_001153838.1 Updated not alive Link to Nucleotide Sequence:NM_001160366.1Link to Protein Sequence:NP_001153838.1Re-query CCDS DB by Nucleotide ID:NM_001160366Re-query CCDS DB by Protein ID:NP_001153838
Current member NCBI NM_001160366.2 NP_001153838.1 Accepted alive Link to Nucleotide Sequence:NM_001160366.2Link to Protein Sequence:NP_001153838.1Re-query CCDS DB by Nucleotide ID:NM_001160366Re-query CCDS DB by Protein ID:NP_001153838Link to BLAST:NP_001153838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153838.1 586 A1L0T3 586 100% 0 0

Chromosomal Locations for CCDS 51664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135960892 135961208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135961889 135961966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135962923 135963234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135963356 135963430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135964619 135964696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135965571 135965885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135966075 135966152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135967738 135968043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135968224 135968259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135970182 135970347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGGGACCGTCGGAAAGGCCATCCATTGGCTGGACACCCAAGGAAGCAGAGATGCAAATTGGCCCCCAGC
CTGATGGATGGAGCAGGGGATGGAAGCCTGGGGACAGGGGTGCTGTCCCCCTGCCCCTCTCCCCAGCACT
GTCCTTCCTCCTTCTGTTCCCACTGGCCAGTGCCCTCCAGCCCACTCCGCTGCCCTTTCCAGAACTGAGG
CTGGTAGGGGGCCCGAGCCGCTGCCGAGGGCGCCTCGAGGTCATGCATAGCGGCTCCTGGGGCAGCGTTT
GCGACGATGACTGGGACGTTGTAGATGCTAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCC
GGTGCCACGGCCCCTCGCCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAGTGCCGCGGG
CAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATG
TGGCAGTCCTGTGTGATGAATTCTTGCACACACAGCCCCCAACAAGGAAGGTGTTAACCAGTATGGCACC
CGCTACAGCCCTCCAAAATGGAAAAGGTGAGGGCAGTGTGCGTCTGGTGGGCGGCGCCAGCCCGTGTCAA
GGCCGAGTGGAGATTCTGCATGGTGGCGTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCAGGATG
CTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGTCGCCTTGGCCGCCACCACTAATGCCTTTTTCGGCTA
TGGTACCGGGCATATCCTGCTGGACAATGTTCACTGCGAAGGTGGCGAGCCCCGCCTGGCAGCCTGCCAG
AGCCTAGGCTGGGGCGTGCACAACTGCGGACACCACGAGGATGCTGGGGTGCTCTGTGCAGTTCTAAGCC
CTCCGACTTCCACAGCTCTGCCTCCGTCTGTCACAAAAGAAGACTGGGCACGGCACACTGGGCCAGCAGC
TACAGGAGTTGGTGCCTCACCTTCCAGGGACACTGTGTGGCTGACGACAGCAGCCCGGGCCTCAGGGAAG
AAAAGCGGAAGGCTGAGGCTGGTCGGGGGCCCGAGCCCGTGCCGCGGCCGCGTGGAGGTGCTGTACGCCG
GGGGTTGGGGCACCGTGTGCGACGATGACTGGGACTTCGCGGACGCGCGGGTGGCCTGTCGCGAGGCGGG
TTGCGGGCCCGCGCTAGGCGCCACGGGCCTTGGTCATTTTGGCTATGGCCGAGGCCCTGTGCTGCTAGAC
AACGTAGGCTGCACCGGTACTGAGGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGACAGCACAACT
GCGGCCACCACGAAGACGCCGGAGCGCTTTGTGCAGGCCCAGAGGAACTGGGACTCCAAGTCCAGCAGGC
TGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATGGGCACCTCCGTCTGGCTAGTGGAACA
CACCGATGTGAGGGGCGCGTAGAACTCTTCCTAGGACAACGGTGGGGCACTGTTTGTGATGATGCCTGGG
ACCTACGGGCAGCCATTGTCCTGTGCCGTCAGCTGGGATGTGGCCAGGCTCTCGCAGCCCCGGGAGAGGC
CCACTTTGGCCCAGGCCGAGGCCCAATCCTCTTGGACAATGTCAAATGCCGAGGAGATGAGAGCACCTTG
CTACTGTGCTCTCATATCCGCTGGGATGTCCACAACTGTGACCACAGCGAGGATGCCAGTGTCTTGTGCC
AGCCATTGTGA

Translation (586 aa):
MGPSERPSIGWTPKEAEMQIGPQPDGWSRGWKPGDRGAVPLPLSPALSFLLLFPLASALQPTPLPFPELR
LVGGPSRCRGRLEVMHSGSWGSVCDDDWDVVDANVVCRQLGCGLALPVPRPLAFGQGRGPIFLDNVECRG
QEASLSECGSRGWGVHNCFHYEDVAVLCDEFLHTQPPTRKVLTSMAPATALQNGKGEGSVRLVGGASPCQ
GRVEILHGGVWGTVCDDDWGLQDAAVVCRQLGCGVALAATTNAFFGYGTGHILLDNVHCEGGEPRLAACQ
SLGWGVHNCGHHEDAGVLCAVLSPPTSTALPPSVTKEDWARHTGPAATGVGASPSRDTVWLTTAARASGK
KSGRLRLVGGPSPCRGRVEVLYAGGWGTVCDDDWDFADARVACREAGCGPALGATGLGHFGYGRGPVLLD
NVGCTGTEARLSDCFHLGWGQHNCGHHEDAGALCAGPEELGLQVQQAGSETTRMPSPRPRDGHLRLASGT
HRCEGRVELFLGQRWGTVCDDAWDLRAAIVLCRQLGCGQALAAPGEAHFGPGRGPILLDNVKCRGDESTL
LLCSHIRWDVHNCDHSEDASVLCQPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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