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Report for CCDS41002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41002.1 Public Mus musculus X Magea10 23 108 98 CCDS HistoryNCBI Gene:236852Re-query CCDS DB by CCDS ID:41002.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088481.4 ENSMUSP00000085832.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088481.4Link to Ensembl Protein Viewer:ENSMUSP00000085832.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088481Re-query CCDS DB by Protein ID:ENSMUSP00000085832
Original member Current member NCBI NM_001085506.1 NP_001078975.1 Accepted alive Link to Nucleotide Sequence:NM_001085506.1Link to Protein Sequence:NP_001078975.1Re-query CCDS DB by Nucleotide ID:NM_001085506Re-query CCDS DB by Protein ID:NP_001078975Link to BLAST:NP_001078975.1

Chromosomal Locations for CCDS 41002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72382409 72383386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCCTAGACCCCGGAAGCGTAGGAGATGTATGGTTGAGGGACAGCCTGAGGCCCAAAGTGTTGCAGTTA
CAATGGAAGAAGATTCCTCCTCATCCTCTTCTACTTATTCCTCGTCTTTCCCTTCTTCCTTCTCTTCTAC
CTCTTCTTCCTATGCTCTAACATCAGGCAACTCAGAGGAGGGCTGTGCTGCTTCTAGAGCATCAAGTCCT
CATAGTCCTCCAGGAGCTGGCTCCTCCTGCACTGCTATGATTTCCTCTCCACGTAGCCAGGTCAGTGCAG
ACTCTGAAGGTGAGGACAGTCCAGGCTCCTCACAGGCCCTGCCATGTGGTACTTCATTGTCTACAGGTGA
GATAGATGTCAAAGTAGACGAGTTGGTAAAATATCTGCTCCTTAAGTATCTTATGCAGGAGCCAGTCAGC
AAGGCAGAAATCCTGAGTAATATCATTAGAAATTATCAGGACCACTTTGCTGTTATATTTCGAGAAGCCT
TAGAGTGCATGCAATTAGTCTTTGGCCTTGAATTAAAGGAAATAGATCCTGCTAGCCACACCTATATCCT
TACCATAGCCCTAGAGCTCACTTATGATGGGATGATGACTGATGTTCAGGGCATACCAAAGACAGGCCTT
CTGATCATGGTACTGAGCATAATATTCATGGAAGGCAACTGTGTCAGTGAGGACATGGTATGGAGTATAT
TGAATAACATAGGCTTGTATGCTGGGAATGAACACTTTATATATGGAGAACCCAGAAAGCTCATCACTGA
TAATTTTGTACAAGAAGGGTACCTGGAATACAGGCATGTGCCTGGCAGCAACCCTCCTTTCTATGAGTTC
CTCTGGGGCCCAAGAGCCTATGCTGAAACCACCAAGATGAAAATCTTGACCTTTTTGACCAGCATCAATG
GGAGTGATCCTAGATCATTTCCAGTGTGGTATGCAGAGGCTTTGAGAGACGAGGAACAGCAGGAATAG

Translation (325 aa):
MPRPRKRRRCMVEGQPEAQSVAVTMEEDSSSSSSTYSSSFPSSFSSTSSSYALTSGNSEEGCAASRASSP
HSPPGAGSSCTAMISSPRSQVSADSEGEDSPGSSQALPCGTSLSTGEIDVKVDELVKYLLLKYLMQEPVS
KAEILSNIIRNYQDHFAVIFREALECMQLVFGLELKEIDPASHTYILTIALELTYDGMMTDVQGIPKTGL
LIMVLSIIFMEGNCVSEDMVWSILNNIGLYAGNEHFIYGEPRKLITDNFVQEGYLEYRHVPGSNPPFYEF
LWGPRAYAETTKMKILTFLTSINGSDPRSFPVWYAEALRDEEQQE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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