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Report for CCDS12788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12788.1 Public Homo sapiens 19 NUP62 24 110 108 CCDS HistoryNCBI Gene:23636Re-query CCDS DB by CCDS ID:12788.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352066.8 ENSP00000305503.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000352066.8Link to Ensembl Protein Viewer:ENSP00000305503.3Re-query CCDS DB by Nucleotide ID:ENST00000352066Re-query CCDS DB by Protein ID:ENSP00000305503
Original member Current member EBI ENST00000422090.2 ENSP00000407331.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422090.2Link to Ensembl Protein Viewer:ENSP00000407331.1Re-query CCDS DB by Nucleotide ID:ENST00000422090Re-query CCDS DB by Protein ID:ENSP00000407331
Original member Current member EBI ENST00000600935.2 ENSP00000468839.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600935.2Link to Ensembl Protein Viewer:ENSP00000468839.2Re-query CCDS DB by Nucleotide ID:ENST00000600935Re-query CCDS DB by Protein ID:ENSP00000468839
Original member Current member EBI ENST00000596437.6 ENSP00000468842.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596437.6Link to Ensembl Protein Viewer:ENSP00000468842.2Re-query CCDS DB by Nucleotide ID:ENST00000596437Re-query CCDS DB by Protein ID:ENSP00000468842
Original member Current member EBI ENST00000599788.2 ENSP00000468884.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599788.2Link to Ensembl Protein Viewer:ENSP00000468884.2Re-query CCDS DB by Nucleotide ID:ENST00000599788Re-query CCDS DB by Protein ID:ENSP00000468884
Original member Current member EBI ENST00000596217.1 ENSP00000471191.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596217.1Link to Ensembl Protein Viewer:ENSP00000471191.1Re-query CCDS DB by Nucleotide ID:ENST00000596217Re-query CCDS DB by Protein ID:ENSP00000471191
Original member Current member EBI ENST00000597029.6 ENSP00000473192.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000597029.6Link to Ensembl Protein Viewer:ENSP00000473192.1Re-query CCDS DB by Nucleotide ID:ENST00000597029Re-query CCDS DB by Protein ID:ENSP00000473192
Original member Current member EBI ENST00000700473.1 ENSP00000515006.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700473.1Link to Ensembl Protein Viewer:ENSP00000515006.1Re-query CCDS DB by Nucleotide ID:ENST00000700473Re-query CCDS DB by Protein ID:ENSP00000515006
Original member Current member EBI ENST00000700474.1 ENSP00000515007.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700474.1Link to Ensembl Protein Viewer:ENSP00000515007.1Re-query CCDS DB by Nucleotide ID:ENST00000700474Re-query CCDS DB by Protein ID:ENSP00000515007
Original member Current member EBI ENST00000700475.1 ENSP00000515008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700475.1Link to Ensembl Protein Viewer:ENSP00000515008.1Re-query CCDS DB by Nucleotide ID:ENST00000700475Re-query CCDS DB by Protein ID:ENSP00000515008
Original member Current member EBI ENST00000598301.2 ENSP00000515009.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000598301.2Link to Ensembl Protein Viewer:ENSP00000515009.1Re-query CCDS DB by Nucleotide ID:ENST00000598301Re-query CCDS DB by Protein ID:ENSP00000515009
Original member Current member EBI ENST00000700476.1 ENSP00000515010.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700476.1Link to Ensembl Protein Viewer:ENSP00000515010.1Re-query CCDS DB by Nucleotide ID:ENST00000700476Re-query CCDS DB by Protein ID:ENSP00000515010
Original member Current member EBI ENST00000600583.6 ENSP00000515011.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600583.6Link to Ensembl Protein Viewer:ENSP00000515011.1Re-query CCDS DB by Nucleotide ID:ENST00000600583Re-query CCDS DB by Protein ID:ENSP00000515011
Original member Current member EBI ENST00000700477.1 ENSP00000515012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700477.1Link to Ensembl Protein Viewer:ENSP00000515012.1Re-query CCDS DB by Nucleotide ID:ENST00000700477Re-query CCDS DB by Protein ID:ENSP00000515012
Original member Current member EBI ENST00000599560.6 ENSP00000515013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599560.6Link to Ensembl Protein Viewer:ENSP00000515013.1Re-query CCDS DB by Nucleotide ID:ENST00000599560Re-query CCDS DB by Protein ID:ENSP00000515013
Original member Current member EBI ENST00000700478.1 ENSP00000515014.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700478.1Link to Ensembl Protein Viewer:ENSP00000515014.1Re-query CCDS DB by Nucleotide ID:ENST00000700478Re-query CCDS DB by Protein ID:ENSP00000515014
Original member Current member NCBI NM_001193357.2 NP_001180286.1 Accepted alive Link to Nucleotide Sequence:NM_001193357.2Link to Protein Sequence:NP_001180286.1Re-query CCDS DB by Nucleotide ID:NM_001193357Re-query CCDS DB by Protein ID:NP_001180286Link to BLAST:NP_001180286.1
Original member Current member NCBI NM_012346.5 NP_036478.2 Accepted alive Link to Nucleotide Sequence:NM_012346.5Link to Protein Sequence:NP_036478.2Re-query CCDS DB by Nucleotide ID:NM_012346Re-query CCDS DB by Protein ID:NP_036478Link to BLAST:NP_036478.2
Original member Current member NCBI NM_016553.5 NP_057637.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016553.5Link to Protein Sequence:NP_057637.2Re-query CCDS DB by Nucleotide ID:NM_016553Re-query CCDS DB by Protein ID:NP_057637Link to BLAST:NP_057637.2
Original member Current member NCBI NM_153718.4 NP_714940.1 Accepted alive Link to Nucleotide Sequence:NM_153718.4Link to Protein Sequence:NP_714940.1Re-query CCDS DB by Nucleotide ID:NM_153718Re-query CCDS DB by Protein ID:NP_714940Link to BLAST:NP_714940.1
Original member Current member NCBI NM_153719.4 NP_714941.1 Accepted alive Link to Nucleotide Sequence:NM_153719.4Link to Protein Sequence:NP_714941.1Re-query CCDS DB by Nucleotide ID:NM_153719Re-query CCDS DB by Protein ID:NP_714941Link to BLAST:NP_714941.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180286.1 522 P37198 522 100% 0 0
NP_036478.2 522 P37198 522 100% 0 0
NP_057637.2 522 P37198 522 100% 0 0
NP_714940.1 522 P37198 522 100% 0 0
NP_714941.1 522 P37198 522 100% 0 0

Chromosomal Locations for CCDS 12788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49908239 49909807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGAGCGGGTTTAATTTTGGAGGCACTGGGGCCCCTACAGGCGGGTTCACGTTTGGCACTGCAAAGACGG
CAACAACCACACCTGCTACAGGGTTTTCTTTCTCCACCTCTGGCACTGGAGGGTTTAATTTTGGGGCTCC
CTTCCAACCAGCCACAAGTACCCCTTCCACCGGCCTGTTCTCACTTGCCACCCAGACTCCGGCCACACAG
ACGACAGGCTTCACTTTTGGAACAGCGACTCTTGCTTCGGGGGGAACTGGATTTTCTTTGGGGATCGGTG
CTTCAAAGCTCAACTTGAGCAACACAGCTGCCACCCCAGCCATGGCAAACCCCAGCGGCTTTGGGCTGGG
CAGCAGCAACCTCACTAATGCCATATCGAGCACCGTCACCTCCAGCCAGGGCACAGCACCCACCGGCTTT
GTGTTTGGCCCCTCCACCACCTCTGTGGCTCCAGCTACCACATCTGGAGGCTTCTCATTCACTGGTGGAA
GCACGGCCCAACCCTCCGGTTTCAACATTGGCTCAGCAGGGAATTCAGCCCAGCCCACGGCACCTGCCAC
GTTGCCCTTCACTCCGGCCACGCCAGCAGCCACCACAGCAGGTGCCACACAGCCAGCTGCTCCCACACCC
ACAGCCACCATCACCAGCACTGGGCCCAGCCTCTTTGCGTCAATAGCAACTGCTCCAACCTCATCTGCCA
CCACTGGACTCTCCCTCTGTACCCCTGTGACCACAGCGGGCGCCCCCACTGCTGGGACACAGGGCTTCAG
CTTAAAGGCACCTGGAGCAGCTTCCGGCACCTCCACAACAACATCCACCGCTGCCACCGCCACCGCCACC
ACCACCAGCAGCAGCAGCACCACCGGCTTTGCCTTGAATTTAAAACCACTGGCGCCAGCCGGGATCCCCA
GCAATACAGCAGCTGCCGTGACCGCTCCACCTGGCCCTGGCGCAGCTGCAGGGGCGGCTGCCAGCTCCGC
CATGACCTACGCGCAGCTGGAGAGCCTGATCAACAAATGGAGCCTGGAGCTAGAGGACCAGGAGCGGCAC
TTCCTCCAGCAGGCCACCCAGGTCAACGCCTGGGACCGCACGCTGATCGAGAATGGAGAAAAGATCACCA
GCCTGCACCGCGAGGTGGAGAAGGTGAAGCTGGACCAGAAGAGGCTGGACCAGGAGCTCGACTTCATCCT
GTCCCAGCAGAAGGAGCTGGAAGACCTGCTGAGCCCACTGGAGGAGTTGGTCAAGGAGCAGAGCGGGACC
ATCTACCTGCAGCACGCGGATGAGGAGCGTGAGAAAACCTACAAGCTGGCTGAGAACATCGATGCACAGC
TCAAGCGCATGGCCCAGGATCTCAAGGACATCATCGAGCACCTGAACACGTCCGGGGCCCCCGCCGACAC
CAGTGACCCACTGCAGCAGATCTGCAAGATCCTCAATGCGCACATGGACTCACTGCAGTGGATCGACCAG
AACTCGGCCCTGCTGCAGAGGAAGGTGGAGGAGGTGACCAAGGTGTGCGAGGGCCGGCGCAAGGAGCAGG
AGCGCAGCTTCCGGATCACCTTTGACTGA

Translation (522 aa):
MSGFNFGGTGAPTGGFTFGTAKTATTTPATGFSFSTSGTGGFNFGAPFQPATSTPSTGLFSLATQTPATQ
TTGFTFGTATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAPTGF
VFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPAAPTP
TATITSTGPSLFASIATAPTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATAT
TTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSLELEDQERH
FLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGT
IYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTSGAPADTSDPLQQICKILNAHMDSLQWIDQ
NSALLQRKVEEVTKVCEGRRKEQERSFRITFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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