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Report for CCDS23648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23648.1 Public Mus musculus 9 Zfp445 23 108 98 CCDS HistoryNCBI Gene:235682Re-query CCDS DB by CCDS ID:23648.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056467.7 ENSMUSP00000055738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056467.7Link to Ensembl Protein Viewer:ENSMUSP00000055738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056467Re-query CCDS DB by Protein ID:ENSMUSP00000055738
Original member Current member EBI ENSMUST00000216063.1 ENSMUSP00000151198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216063.1Link to Ensembl Protein Viewer:ENSMUSP00000151198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216063Re-query CCDS DB by Protein ID:ENSMUSP00000151198
Original member NCBI NM_001359935.1 NP_001346864.1 Updated not alive Link to Nucleotide Sequence:NM_001359935.1Link to Protein Sequence:NP_001346864.1Re-query CCDS DB by Nucleotide ID:NM_001359935Re-query CCDS DB by Protein ID:NP_001346864
Current member NCBI NM_001359935.2 NP_001346864.1 Accepted alive Link to Nucleotide Sequence:NM_001359935.2Link to Protein Sequence:NP_001346864.1Re-query CCDS DB by Nucleotide ID:NM_001359935Re-query CCDS DB by Protein ID:NP_001346864Link to BLAST:NP_001346864.1
Original member NCBI NM_173364.5 NP_775540.4 Updated not alive Link to Nucleotide Sequence:NM_173364.5Link to Protein Sequence:NP_775540.4Re-query CCDS DB by Nucleotide ID:NM_173364Re-query CCDS DB by Protein ID:NP_775540
Current member NCBI NM_173364.6 NP_775540.4 Accepted alive Link to Nucleotide Sequence:NM_173364.6Link to Protein Sequence:NP_775540.4Re-query CCDS DB by Nucleotide ID:NM_173364Re-query CCDS DB by Protein ID:NP_775540Link to BLAST:NP_775540.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346864.1 986 Q8R2V3 986 100% 0 0
NP_775540.4 986 Q8R2V3 986 100% 0 0

Chromosomal Locations for CCDS 23648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122851914 122853988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854707 122854817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122856699 122856825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122857103 122857161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122857470 122857638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122861709 122862128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2961 nt):
ATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGG
TAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGG
CCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTG
AGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGT
TGTTGGTCTTGGAGCAATTCCTGAGCATCTTGCCTGGAGAGCTCCGGACATGGGTCCAACTCCATTGCCC
TGAGAGTGGTGCAGAGGTTGTGGCCCTGCTGGAAGAGCTGCAGAGGGATCTTGATGGAACCCCACTGAAG
GATCCATGTCTTACTCAGAATCCAGATGTGCATTGGATAGGCACTAGTGCTCTGCAGCCCGCACAGATAT
GGTCCCCTGCATCACATCTCAAGAACAGTTCTGCTCTAGAGGACCACTTGGAGACTTCACATGGAATAGG
AATTTGTGACGTCCTGGCTGAACAAACTGATTCTCCTGCTGTCTCGGTGCCTGACTATTTCCAGTTAGAA
GAGGGCATAGAATACCAGGAAGCTTTGACTTTCCAGGATGTGGAGGTGACCTTCTCTCAGGAAGAGTGGG
GATGTTTGAACTCAGCTCAGCGCAATCTTTATCGGGATGTTATCCTGGAGAATTATGGGAATGTAGTTTC
TGTGGTGGGCTCCTCTCCCAAACCTGCTCTGATCTCCTGGCTAGAAGCCAGGAAGCCATGGGGCGTGAAC
ATCTGCACGGTTCAGCTTAAGAGAGATGCTGATGCTGCGCCTGAAGGAGGTAAGCTTCAGATTAAGCCAA
ACAAATTCATCTTGAAACAGAAACCTTCTGAATACATAGAAGCCTGTGTAAAGACATCAGTAAGTCCTGA
GACAAGTGTTTCTGAGGAGACAGGGCTCAAAGAATCTTTTAAACAGAAGAGTAGGCTACAGACGTCCTGT
GGAGACTCCATACAAATGAAAGAGATGAAGGAAGGAGCCGACATTAGTCAAAGGACAGGAAGAGAATCTG
AAGTATTGAGAAACAATGATATTCTTGAGTTAAAACATGTTAAATGTGTGAGTGTTTCTAGAAAAAGGCT
ATCCTTTAAACATGGCTATGACAGAAACTTCAGAAAAAGTTCACACCATTATAATAATAAATATGGGGAA
GGACTCAGAGGCACAGGTGAGGGGTTTGGTGTGTATCAGAATACTGGACTGAAAGAAAATGGAAAGGACA
GATATGGAGAGACCTCAAGGAAGAGCTGGCATGCCCATCCTGAACATCGGCAGCCAAGCTACAGTGAAGA
GGGCCTGTTTCAATGCAGGGTGTGTGGGAAAGCGTTCAAGTGGCGTTCAAACCGTATACGGCATGAGAAA
ATTCACACTGGAGTGAAACCTTACCAATGCAGCTTATGTGAGAAAGCTTTCCAACGTTTGTCATCCTACC
GTCTGCACCAAAAAACCCATAGTAAACAGAAACGTGGATCCAGTAAGTACAAAAATGCCCTCACCTGCAG
CTTGGATGTCAGTCACCATTTGACAGACCGGGATGAGAGGAAACACTTACACTGTAACCAGTGTGGGAAA
AACTTCTCCTGTAAGTCCTATGCTATTGAACACCAAAGGATTCACACACAGGAGAAACCTTATAAATGTA
CCAGATGTAGGAAAACCTTTCGGTGGAAGTCAAACTTTTCTCGTCATATGAAATTACATCACAAAGAGGT
GTATAAACAAGAGAAACGTCAAGAAGACTTCAAGCAGAGTTACAGGCAGTCTCAGGTTATCTCTACTGTA
GAGAAAACTTTTCCATGTCAGAATTGTGGGAAAACTTTTACTCAAAAGAAATCACTCATTGAGCACCAGA
GGATTCATACAGGGGAGAAACCGTACCAGTGTAGTGGGTGTGGAGAAACATTTACCTATAGGTCATCTTA
TATTATTCATATGAAGCGAACGCAACATGCTATTAAAATAAAGCCTGAGCATGGCTGCCTAACTTTTAGT
CAGGGTGCAGTGTTTCCCATTCCTCGGGGTAGTCATAATACTGAGGGGTCTAATAAGTGTAAATACTGTG
GCAAAGCCTTTCACAATCGCTCATTTCTTCTCATTCATGAGAGAGTTCACACTAGAGAGAAGCCCTATCA
GTGCAGGGAGTGTGAAAAAGCCTTCCGATGGAGTTCCAATCTCTACCGACATCAGAGAAAACACTTTTTG
CACAAGCGGTATAAGTATCGTGAAAGTAAAGAGACTTCAAATCTACAGTCAAAAATTCTCATTGATCAGA
AGCCCTTTTGGTGTCAAGAATGTGGAAAAACCTTTACACGTAAAAGAAGCCTTTTAGATCATAAGGGAAT
ACACAGTGGAGAGAGACGCTTTAAGTGCAACTTGTGTGAAAAATCTTTTGATAGAAACTATCGACTTGTT
AATCACCAGAGGATCCACACTACAGAGCAACCACAGTGGCGTGATAAAGATTTTGTTGGGATACATGCCC
GTTCTGTTGACCAGAGAAAACACAGCAACACGCTGCAGTCTGAATATGGCCTACATTCAGATAAGCCTGG
CTTATCTTACTGTCAGGATGTAAGGTTAAATATTCAGGAACTAAGTGGAAAGCTCCGTAAAGAGTGTGAT
AACCCTTCTGATGAGAGTTCCAAGTCAATTGCATTCCAGAATGTGCCCACCAAGAAGAAAGCCTGCCACA
AATGCAGCACTTGCGGGAAAACATTTAAAAAGCATTCACATCTTATTAGCCACAAGAGATGTCACACAAA
AGAGAGGCCCTTCAAATGCATAGTGTGTGGGAAGACCTTCAGGTGGTCTTCCAATTTGACTCGGCATATG
AAAAACCATGTTAGAAATTAG

Translation (986 aa):
MPPGRWHAARSAQVSREQGCLRMVKEEEEDGYISMQTARPQTLNRPGQELFRQLFRQLRYHESSGPLETL
SRLQELCRWWMRPDVLSKAQMLELLVLEQFLSILPGELRTWVQLHCPESGAEVVALLEELQRDLDGTPLK
DPCLTQNPDVHWIGTSALQPAQIWSPASHLKNSSALEDHLETSHGIGICDVLAEQTDSPAVSVPDYFQLE
EGIEYQEALTFQDVEVTFSQEEWGCLNSAQRNLYRDVILENYGNVVSVVGSSPKPALISWLEARKPWGVN
ICTVQLKRDADAAPEGGKLQIKPNKFILKQKPSEYIEACVKTSVSPETSVSEETGLKESFKQKSRLQTSC
GDSIQMKEMKEGADISQRTGRESEVLRNNDILELKHVKCVSVSRKRLSFKHGYDRNFRKSSHHYNNKYGE
GLRGTGEGFGVYQNTGLKENGKDRYGETSRKSWHAHPEHRQPSYSEEGLFQCRVCGKAFKWRSNRIRHEK
IHTGVKPYQCSLCEKAFQRLSSYRLHQKTHSKQKRGSSKYKNALTCSLDVSHHLTDRDERKHLHCNQCGK
NFSCKSYAIEHQRIHTQEKPYKCTRCRKTFRWKSNFSRHMKLHHKEVYKQEKRQEDFKQSYRQSQVISTV
EKTFPCQNCGKTFTQKKSLIEHQRIHTGEKPYQCSGCGETFTYRSSYIIHMKRTQHAIKIKPEHGCLTFS
QGAVFPIPRGSHNTEGSNKCKYCGKAFHNRSFLLIHERVHTREKPYQCRECEKAFRWSSNLYRHQRKHFL
HKRYKYRESKETSNLQSKILIDQKPFWCQECGKTFTRKRSLLDHKGIHSGERRFKCNLCEKSFDRNYRLV
NHQRIHTTEQPQWRDKDFVGIHARSVDQRKHSNTLQSEYGLHSDKPGLSYCQDVRLNIQELSGKLRKECD
NPSDESSKSIAFQNVPTKKKACHKCSTCGKTFKKHSHLISHKRCHTKERPFKCIVCGKTFRWSSNLTRHM
KNHVRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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