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Report for CCDS23564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23564.1 Public Mus musculus 9 Scap 23 108 98 CCDS HistoryNCBI Gene:235623Re-query CCDS DB by CCDS ID:23564.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098350.9 ENSMUSP00000095953.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098350.9Link to Ensembl Protein Viewer:ENSMUSP00000095953.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098350Re-query CCDS DB by Protein ID:ENSMUSP00000095953
Original member Current member NCBI NM_001001144.3 NP_001001144.2 Accepted alive Link to Nucleotide Sequence:NM_001001144.3Link to Protein Sequence:NP_001001144.2Re-query CCDS DB by Nucleotide ID:NM_001001144Re-query CCDS DB by Protein ID:NP_001001144Link to BLAST:NP_001001144.2
Original member Current member NCBI NM_001103162.2 NP_001096632.1 Accepted alive Link to Nucleotide Sequence:NM_001103162.2Link to Protein Sequence:NP_001096632.1Re-query CCDS DB by Nucleotide ID:NM_001103162Re-query CCDS DB by Protein ID:NP_001096632Link to BLAST:NP_001096632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001144.2 1276 Q6GQT6 1276 100% 0 0
NP_001096632.1 1276 Q6GQT6 1276 100% 0 0

Chromosomal Locations for CCDS 23564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110353043 110353164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110362394 110362523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110372197 110372354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110372976 110373196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110373390 110373495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110373997 110374169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110374510 110374636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110376563 110376675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110377639 110377733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110378344 110378442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110378569 110378787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110379456 110379832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380201 110380389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380494 110380695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380773 110380888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380972 110381485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110381563 110381648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110383549 110383631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110383732 110383898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110384066 110384146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110384267 110384473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110384556 110384801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3831 nt):
ATGACCCTGACTGAAAGGCTTCGTGAGAAGATATCTCAGGCCTTCTACAACCATGGGCTGCTCTGCGCAT
CCTATCCAATTCCCATCATCCTCTTCACAGGACTCTGCATCTTAGCCTGCTGCTACCCGCTGCTGAAGCT
CCCCTTGCCTGGAACGGGACCTGTGGAATTCTCCACGCCTGTGAAGGGTTACTCGCCCCCGCCTGCGGAC
TCTGACCACAAACAAGGAGAGCCCAGCGAGCAGCCAGAGTGGTATGTGGGTGCCCCCGTGGCGTACATCC
AACAGATATTTGTGAAGTCATCGGTGTCTCCCTGGCACAGAAATCTTCTGGCAGTCGATGTGTTCCGGTC
ACCTCTGTCCCGAGCATTCCAACTGGTGGAAGAGATCCGGAACCATGTGCTGAGAGACAGCTCAGGGACC
AAGAGCCTGGAGGAGGTTTGCCTGCAGGTGACAGACCTGCTGCCAGGCCTCAGGAAACTCCGGAGCCTAC
TTCCCGAACATGGCTGCCTGCTGCTGTCCCCTGGGAACTTCTGGCAGAATGATTGGGAGAGATTCCATGC
CGACCCTGACATCATTGGGACCATCCATCAACATGAGCCCAAAACTCTACAGACATCAGCCACACTCAAA
GACTTGCTGTTTGGTGTTCCTGGGAAGTACAGTGGGGTGAGCCTCTACACAAGGAAAAGGATGGTCTCCT
ACACCATCACCCTGGTCTTCCAGCGCTACCATGCCAAGTTTCTGAGCAGCCTACGTGCCCGGCTCATGCT
GCTGCACCCCAGCCCCAACTGCAGCCTCCGAGCAGAGAACCTGGTCCACGTCCACTTCAAAGAGGAGATT
GGCATTGCTGAGCTCATCCCGCTCGTGACCACCTACATCATCCTGTTTGCCTACATCTACTTCTCCACAC
GCAAGATCGACATGGTCAAGTCCAAGTGGGGCCTCGCCCTGGCAGCCGTGGTCACAGTACTTAGCTCACT
GCTCATGTCTGTGGGGCTCTGCACCCTCTTCGGCCTGACGCCCACACTCAATGGCGGTGAGATCTTCCCA
TACCTGGTGGTCGTTATTGGGCTAGAGAACGTGTTGGTGCTCACCAAGTCAGTGGTATCAACTCCAGTGG
ACCTCGAGGTGAAGCTTCGGATTGCACAAGGCTTGAGTAGTGAGAGCTGGTCCATCATGAAGAACGCGGC
GACCGAGCTGGGCATCATCCTCATTGGCTACTTCACCCTCGTGCCTGCTATCCAGGAGTTCTGCCTCTTT
GCTGTTGTGGGCCTGGTGTCTGACTTCTTCCTCCAGATGCTGTTCTTCACCACTGTCCTGTCGATCGACA
TTCGCCGGATGGAGCTAGCAGACCTAAACAAGCGGCTGCCCCCTGAATCCTGCCTGCCCTCAGCCAAGCC
CGTGGGGAGGCCAGCACGATATGAGAGACAGCAGGCTGTACGGCCATCCACGCCACACACCATCACATTG
CAACCATCTTCCTTCCGAAACCTGCGGCTTCCCAAAAGGCTGCGTGTCATCTACTTCCTGGCCCGCACTC
GCCTGGCCCAGCGCCTCATCATGGCTGGTACCGTTGTCTGGATTGGCATCCTGGTATACACCGACCCGGC
AGGGCTGCGCACCTACCTTGCTGCCCAGGTGACAGAGCAGAGCCCACTGGGTGAGGGTTCCCTGGGCCCC
ATGCCTGTGCCTAGCGGAGTGCTGCCTGCCAGCCACCCGGACCCTGCATTCTCCATCTTCCCACCTGATG
CTCCTAAACTGCCAGAGAACCAGACCTTGCCAGGTGAGCTGCCTGAGCATGCTGGTCCAGCAGAGGGTGT
CCATGACAGCCGAGCCCCAGAGGTAACTTGGGGGCCTGAGGATGAGGAGCTGTGGAGGAAATTGTCCTTC
CGCCACTGGCCCACACTCTTCAACTACTACAACATCACACTGGCCAAAAGGTACATCAGCCTGCTGCCTG
TCATCCCTGTCACACTACACCTGAATCCACGGGAGGCTCTGGAGGGGCGACACCCTCAGGATGGTCGCAG
TGCCTGGGCCCCACAAGAGCCTTTGCCCGCTGGCCTCTGGGAGTCCGGACCTAAGGGACCAGGTGGAACA
CAGACCCATGGCGACATTACCTTGTACAAGGTGGCCGCGCTTGGCCTAGCAGCGGGCATCGTCCTGGTGC
TGCTGCTGCTCTGCCTCTACCGGGTGCTCTGCCCGCGTAATTATGGGCAGCCGGGTGGTGGCCCCGGCAG
GCGGAGGCGCGGGGAGCTGCCCTGCGATGACTACGGCTACGCACCGCCCGAGACGGAGATAGTGCCGCTG
GTGCTGCGAGGTCACCTCATGGACATCGAGTGTCTGGCTAGCGATGGGATGCTACTAGTGAGCTGCTGCC
TGGCAGGCCAAGTCTGCGTGTGGGACGCTCAGACAGGGGACTGCCTCACACGGATCCCACGCCCAGGGCC
ACGCCGGGATAGCTGCGGAGGTGGAGCTTTTGAGACTCAGGAGAACTGGGAAAGGCTGTCAGATGGAGGC
AAGGCTAGCCCGGAAGAACCTGGAGACAGCCCTCCGCTGCGACGACGCCCCCGAGGGCCTCCACCGCCTT
CCCTCTTTGGGGACCAGCCCGACCTCACCTGCTTAATCGACACCAACTTCTCGGTGCAGCTGCCCCCAGA
GCCCACTCAGCCCGAGCCTCGGCACCGGGTGGGCTGTGGCCGCTCTAGAGACTCGGGTTATGACTTCAGC
CGCCTGGTGCAGCGTGTGTACCAGGAGGAAGGCCTGGCTGCTATGCGCATGCCGGCCCTGCGCCCACCCT
CCCCTGGACCTCCCTTGCCCCAGGCCTCTCAAGAAGAGGGGACTGCACCTGAGAAGGGCTCCCCTCCCCT
GGCCTGGACCCCCAGCACAGCCGGTTCCATCTGGAGCTTAGAGCTGCAAGGCAATCTCATCGTGGTTGGG
CGGAGCAGCGGCCGGCTGGAGGTGTGGGACGCCATTGAGGGGGTGCTCTGCTGCAGCAATGAGGAGATCT
CCTCAGGCATCACAGCCCTTGTCTTCTTGGACAGGAGGATTGTAGCTGCTCGGCTTAATGGTTCCCTTGA
TTTCTTTTCTTTGGAGACCCACACTTCCCTCAGCCCCCTGCAGTTCAGAGGGACCCCAGGGCGAGGCAGT
TCTCCTTCCTCATCTGTGTACAGCAGCAGCAACACAGTGACCTGTCATCGGACCCACACAGTGCCCTGTG
CACACCAGAAGCCCATCACAGCCCTGAGAGCTGCTGCCGGGCGCCTAGTGACAGGGAGCCAAGACCATAC
TCTAAGAGTCTTCCGACTGGATGACTCGTGTTGCCTCTTTACCCTGAAGGGCCACTCAGGGGCAATCACA
GCTGTGTACATTGATCAGACCATGGTACTGGCCAGTGGAGGACAAGATGGAGCCATCTGCCTGTGGGATG
TACTAACAGGCAGCCGGGTCAGCCAAACATTTGCTCACCGTGGAGATGTTACCTCCCTCACCTGTACCGC
TTCCTGTGTCATTAGTAGTGGCCTGGATGACTTCATCAGTATCTGGGACCGCAGCACAGGCATCAAGCTG
TACTCCATTCAGCAGGACCTGGGCTGTGGTGCAAGCTTGGGTGTCATCTCAGATAACCTTCTGGTGACCG
GCGGCCAGGGCTGTGTCTCCTTTTGGGACCTAAACTATGGGGACCTGTTACAGACAGTCTACTTGGGCAA
GAACAGTGAAGCCCAGCCTGCCCGGCAGATTTTGGTGTTGGACAATGCTGCCATTGTCTGCAACTTTGGC
AGTGAGCTCAGCCTAGTGTATGTGCCCTCTGTGCTGGAGAAACTGGACTGA

Translation (1276 aa):
MTLTERLREKISQAFYNHGLLCASYPIPIILFTGLCILACCYPLLKLPLPGTGPVEFSTPVKGYSPPPAD
SDHKQGEPSEQPEWYVGAPVAYIQQIFVKSSVSPWHRNLLAVDVFRSPLSRAFQLVEEIRNHVLRDSSGT
KSLEEVCLQVTDLLPGLRKLRSLLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLK
DLLFGVPGKYSGVSLYTRKRMVSYTITLVFQRYHAKFLSSLRARLMLLHPSPNCSLRAENLVHVHFKEEI
GIAELIPLVTTYIILFAYIYFSTRKIDMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFP
YLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGYFTLVPAIQEFCLF
AVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAKPVGRPARYERQQAVRPSTPHTITL
QPSSFRNLRLPKRLRVIYFLARTRLAQRLIMAGTVVWIGILVYTDPAGLRTYLAAQVTEQSPLGEGSLGP
MPVPSGVLPASHPDPAFSIFPPDAPKLPENQTLPGELPEHAGPAEGVHDSRAPEVTWGPEDEELWRKLSF
RHWPTLFNYYNITLAKRYISLLPVIPVTLHLNPREALEGRHPQDGRSAWAPQEPLPAGLWESGPKGPGGT
QTHGDITLYKVAALGLAAGIVLVLLLLCLYRVLCPRNYGQPGGGPGRRRRGELPCDDYGYAPPETEIVPL
VLRGHLMDIECLASDGMLLVSCCLAGQVCVWDAQTGDCLTRIPRPGPRRDSCGGGAFETQENWERLSDGG
KASPEEPGDSPPLRRRPRGPPPPSLFGDQPDLTCLIDTNFSVQLPPEPTQPEPRHRVGCGRSRDSGYDFS
RLVQRVYQEEGLAAMRMPALRPPSPGPPLPQASQEEGTAPEKGSPPLAWTPSTAGSIWSLELQGNLIVVG
RSSGRLEVWDAIEGVLCCSNEEISSGITALVFLDRRIVAARLNGSLDFFSLETHTSLSPLQFRGTPGRGS
SPSSSVYSSSNTVTCHRTHTVPCAHQKPITALRAAAGRLVTGSQDHTLRVFRLDDSCCLFTLKGHSGAIT
AVYIDQTMVLASGGQDGAICLWDVLTGSRVSQTFAHRGDVTSLTCTASCVISSGLDDFISIWDRSTGIKL
YSIQQDLGCGASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFG
SELSLVYVPSVLEKLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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