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Report for CCDS23309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23309.1 Public Mus musculus 9 Rab8b 23 108 98 CCDS HistoryNCBI Gene:235442Re-query CCDS DB by CCDS ID:23309.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041139.8 ENSMUSP00000041857.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041139.8Link to Ensembl Protein Viewer:ENSMUSP00000041857.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041139Re-query CCDS DB by Protein ID:ENSMUSP00000041857
Original member Current member NCBI NM_173413.3 NP_775589.1 Accepted alive Link to Nucleotide Sequence:NM_173413.3Link to Protein Sequence:NP_775589.1Re-query CCDS DB by Nucleotide ID:NM_173413Re-query CCDS DB by Protein ID:NP_775589Link to BLAST:NP_775589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775589.1 207 P61028 207 100% 0 0

Chromosomal Locations for CCDS 23309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 66847719 66847811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66848598 66848648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66851334 66851399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66852927 66853016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66854668 66854745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66860837 66860897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66863423 66863483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66919510 66919633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCGAAGACGTACGATTATCTGTTCAAGCTGCTGCTCATCGGCGACTCCGGCGTTGGCAAGACCTGCC
TCCTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTTATCTCCACCATCGGAATTGATTTTAAAAT
CAGAACGATAGAACTCGACGGAAAGAAAATTAAACTTCAGATATGGGACACGGCGGGCCAGGAAAGATTC
CGAACAATTACGACAGCATACTATAGAGGAGCCATGGGAATTATGCTGGTCTATGACATCACCAATGAAA
AATCCTTTGACAATATTAAAAATTGGATAAGAAACATTGAAGAGCACGCCTCTTCAGATGTTGAAAGAAT
GATCCTGGGTAACAAATGTGATATGAACGACAAAAGACAAGTGTCGAAAGAGAGAGGGGAGAAGTTAGCA
ATTGACTATGGGATTAAATTTTTGGAGACAAGTGCAAAGTCGAGTACAAATGTAGAAGAGGCATTTTTTA
CACTTGCACGGGATATAATGACAAAACTCAACAGGAAAATGAACGACAGCAATTCATCAGGAGCAGGTGG
GCCAGTGAAGATAACAGAGAGCCGGTCTAAGAAGACCAGTTTCTTCCGCTGTTCTCTGCTTTGA

Translation (207 aa):
MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF
RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLA
IDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRSKKTSFFRCSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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