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Report for CCDS23274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23274.1 Public Mus musculus 9 Lctl 23 108 98 CCDS HistoryNCBI Gene:235435Re-query CCDS DB by CCDS ID:23274.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034969.13 ENSMUSP00000034969.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034969.13Link to Ensembl Protein Viewer:ENSMUSP00000034969.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034969Re-query CCDS DB by Protein ID:ENSMUSP00000034969
Original member NCBI NM_145835.2 NP_665834.1 Updated not alive Link to Nucleotide Sequence:NM_145835.2Link to Protein Sequence:NP_665834.1Re-query CCDS DB by Nucleotide ID:NM_145835Re-query CCDS DB by Protein ID:NP_665834
Current member NCBI NM_145835.3 NP_665834.1 Accepted alive Link to Nucleotide Sequence:NM_145835.3Link to Protein Sequence:NP_665834.1Re-query CCDS DB by Nucleotide ID:NM_145835Re-query CCDS DB by Protein ID:NP_665834Link to BLAST:NP_665834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665834.1 566 Q8K1F9-1 566 100% 0 0

Chromosomal Locations for CCDS 23274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64117734 64117848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64118780 64118943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64119428 64119515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64119739 64119848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64122106 64122234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64122323 64122418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64126701 64126755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64126838 64126999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64131550 64131824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64132803 64132929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64133098 64133297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64134852 64134915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64137806 64137921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGAAGCCAGTGTGGGTCATCATCCTTGGGTGGATCCTGCTGGTGCCCAGGGTAGGGACTGCCTGGAGAG
GACCCCCAGAAGAGGCATCCTTCTACTATGGAACCTTTCCACCCGGCTTCTCCTGGGGCGTGGGCAGTTC
TGCCTACCAGACAGAAGGTGCATGGGACGAGGATGGGAAAGGGCCCAGCATCTGGGATGCCTTCACACAT
GGCAGAAAGGAACAGGTGCTAGGAGGTGACACAGCAGACACAGCCTGTGACAGCTACTATAAAGTTCAGG
AGGACATTGCCCTGCTGAAGGAACTACAAGTCAGCCACTACCGATTTTCCCTGTCTTGGCCGCGGCTCCT
GCCCACGGGGGTCAGAGCTGAACAGGTGAACAAGAGAGGAATCAAATTCTACAGCGATTTCATTGACGCT
CTCCTGAAGAGCAACATCACCCCCGTTGTGACCTTGCACCACTGGGACCTACCACAGATGCTCCAGGTAG
CATACGGCGGGTGGCAGAATGTGAGTATGACCCGATACTTCAGTGACTATGCTGACCTATGCTTTGAGGT
CTTTGGGGACCGAGTGAAGCATTGGCTCACATTCAGTGATCCTCGGACAATGGTAGAAAAAGGTTATGAG
ACCGGTCTCCACGCACCAGGCCTGAGGCTCCAGGGCACTGGCCTATATGTGGCTGCACACCATATCATTA
AGGCCCACGCCCAGGCTTGGCATTCTTATAATAACACGTGGCGCAGCAAACAGCACGGCCTAGTAGGGAT
CTCACTGAACTGTGACTGGGGGGAACCTGTGGACATCGACAACCCCGACGATATTGAGGCTGCTGAGCGA
TACCTACAGTTCTGTCTCGGTTGGTTTGCCAACCCTATTTACGCTGGTGACTACCCCCAAGTCATGAAAG
ACCACATTGGAACAAAGAGTGCCGAGCAAGGCCTGGAGATGTCGAGGTTGCCCACGTTCTCCCTGCAGGA
GAAGAGCTACCTTAAAGGCACATCTGACTTCCTGGGCCTGGGCCATTTTACCACTCGATACATCACTCAA
AGGAAATATCCCTCCCACCAGGGGCCCAGCTACCAGAATGACCGTGACTTAGTGGAGCTTGTGGACCCCA
ACTGGCCAGAAATGGGATCCCCATGGCTCTATTCTGTGCCGTGGGGATTCAGGAGGCTTCTCAACTTTGC
CCAGACTCAGTACGGTGACCCTCCCATATATGTGACAGAAAGTGGAGCGCCCCAAAAGTTACATTGCACT
CAGTTCTGCGATGAGTGGAGAATCCAGTACCTCAAAGGATACATCAATGAAATGTTAAAAGCTATAAAAG
ATGGCGTGGATATAAAAGGGTATACTTCCTGGTCTCTGTTGGATAAGTTTGAATGGGAGAAAGGCTATGC
AGATAAATATGGATTCTACTATGTTGAATTCAATGTGAGAAACAAGCCTCGCTATCCCAAGGCTTCTGTG
CAGTATTACAAGGAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCA
AAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGT
GGCTTCAGAGATTGTGGTCCCCACAGTCTGCGCCCTCTCCATCCTCACTGCTGCCCTGATGCTGACACTT
CTCCTCAGGAGACGTGGCTGA

Translation (566 aa):
MKPVWVIILGWILLVPRVGTAWRGPPEEASFYYGTFPPGFSWGVGSSAYQTEGAWDEDGKGPSIWDAFTH
GRKEQVLGGDTADTACDSYYKVQEDIALLKELQVSHYRFSLSWPRLLPTGVRAEQVNKRGIKFYSDFIDA
LLKSNITPVVTLHHWDLPQMLQVAYGGWQNVSMTRYFSDYADLCFEVFGDRVKHWLTFSDPRTMVEKGYE
TGLHAPGLRLQGTGLYVAAHHIIKAHAQAWHSYNNTWRSKQHGLVGISLNCDWGEPVDIDNPDDIEAAER
YLQFCLGWFANPIYAGDYPQVMKDHIGTKSAEQGLEMSRLPTFSLQEKSYLKGTSDFLGLGHFTTRYITQ
RKYPSHQGPSYQNDRDLVELVDPNWPEMGSPWLYSVPWGFRRLLNFAQTQYGDPPIYVTESGAPQKLHCT
QFCDEWRIQYLKGYINEMLKAIKDGVDIKGYTSWSLLDKFEWEKGYADKYGFYYVEFNVRNKPRYPKASV
QYYKEIITASGFPNPQEVESWRLKALETCSINNQMLATEPLLRHMHVASEIVVPTVCALSILTAALMLTL
LLRRRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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