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Report for CCDS40628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40628.1 Public Mus musculus 9 Hoatz 23 108 98 CCDS HistoryNCBI Gene:235345Re-query CCDS DB by CCDS ID:40628.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170947.2 ENSMUSP00000126725.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170947.2Link to Ensembl Protein Viewer:ENSMUSP00000126725.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170947Re-query CCDS DB by Protein ID:ENSMUSP00000126725
Original member Current member NCBI NM_177702.4 NP_808370.1 Accepted alive Link to Nucleotide Sequence:NM_177702.4Link to Protein Sequence:NP_808370.1Re-query CCDS DB by Nucleotide ID:NM_177702Re-query CCDS DB by Protein ID:NP_808370Link to BLAST:NP_808370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808370.1 168 Q80Y73 168 100% 0 0

Chromosomal Locations for CCDS 40628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 51081473 51081530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51083579 51083631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51086114 51086173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51100000 51100070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51101054 51101092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51101745 51101970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGAAACGGGGCCCAGAGGCTGTCCTAGCGGCAGGAAGGAATCCCAGGAAATCTGCTCCCCTGGATTAC
TGGTGTTCACCGGCTGCTCTGAGCAGGATGCCAATTTGGCTAAGCAGTTTTGGCTCGGGGCGTCCATGTA
CCCCACTACCGAATCTCAGCTCGTGCTGACCCGAGGCAGCAGTCAGAGGCTACCGGTGGCGCGGAACTCT
AAAGTCGTTCTGAGAGAGAAAAGTTCTGTCCAGCCCTTTCCCTTTGATCAGGACAAGGATGCAATTATCT
TTGCTAAAGCCCAAAGGATTCAGGAATCTGAAGAGAGAGCAAAGTATCTCCAAAAGGCCAAAACGCGAGA
TGAGATTCTCCAACTTTTAAGGAAACAAAGAGAAGAAAGGATCTCGAAAGAACTGATTTCATTACCTTAT
AAACCTAAGGACAAAGTGCCCAAATCAAAGGAAGTTTTATCAGAGTCAGGCCTAAGGGACCAAGAAGAAG
TCAAAGCCTTGGAATGA

Translation (168 aa):
METGPRGCPSGRKESQEICSPGLLVFTGCSEQDANLAKQFWLGASMYPTTESQLVLTRGSSQRLPVARNS
KVVLREKSSVQPFPFDQDKDAIIFAKAQRIQESEERAKYLQKAKTRDEILQLLRKQREERISKELISLPY
KPKDKVPKSKEVLSESGLRDQEEVKALE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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