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Report for CCDS37534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37534.1 Public Mus musculus 17 Pxt1 23 108 98 CCDS HistoryNCBI Gene:69307Re-query CCDS DB by CCDS ID:37534.1Re-query CCDS DB by GeneID:69307See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051526.5 ENSMUSP00000053366.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051526.5Link to Ensembl Protein Viewer:ENSMUSP00000053366.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051526Re-query CCDS DB by Protein ID:ENSMUSP00000053366
Original member Current member NCBI NM_153390.1 NP_700439.1 Accepted alive Link to Nucleotide Sequence:NM_153390.1Link to Protein Sequence:NP_700439.1Re-query CCDS DB by Nucleotide ID:NM_153390Re-query CCDS DB by Protein ID:NP_700439Link to BLAST:NP_700439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700439.1 51 Q8K459 51 100% 0 0

Chromosomal Locations for CCDS 37534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28934702 28934806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28941242 28941292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (156 nt):
ATGCAGCTTAGACACATTGGGGACAGTGTCAATCACAGGGTGATTCAGGAGCATCTTGCACAGGAAGTCG
GAGATGTGCTGGCTCCTTTTGTGGCGCTGGTGTTCGTGAGAGGCCAGGTGCTGCTGAGATTTTTCTGGAA
CAACCATTTGCTGTAA

Translation (51 aa):
MQLRHIGDSVNHRVIQEHLAQEVGDVLAPFVALVFVRGQVLLRFFWNNHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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