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Report for CCDS22932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22932.1 Public Mus musculus 9 Cypt4 23 108 98 CCDS HistoryNCBI Gene:235067Re-query CCDS DB by CCDS ID:22932.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053956.7 ENSMUSP00000054958.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053956.7Link to Ensembl Protein Viewer:ENSMUSP00000054958.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053956Re-query CCDS DB by Protein ID:ENSMUSP00000054958
Original member Current member NCBI NM_173412.2 NP_775588.2 Accepted alive Link to Nucleotide Sequence:NM_173412.2Link to Protein Sequence:NP_775588.2Re-query CCDS DB by Nucleotide ID:NM_173412Re-query CCDS DB by Protein ID:NP_775588Link to BLAST:NP_775588.2

Chromosomal Locations for CCDS 22932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 24625216 24625677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGACTCGGGTGGCCAAGAAAGTCCACTGGTCTAGAGCAGCAACAGCAGCAGCCGCCGCTGCCAAAGCCA
AAAGATCGAAGCTTAAGAAGAAGCGAAACCCTAGATCTAAGCTTCCCAAGAGATCTCGTCACTCCTTAAT
TCGTTCTCATTCTCGTTCCTGTTGTTGCTGTCTTCGTTCTCGTAGCAGAACTACATTAAAGATTACGAAG
AAGGGGGAACAATCACTGCGAAGGAGAATTAGGAGACGAATCAAGCGTGCTACTGAACTTCGATTGATGC
GAAGTCAAATGGAGCAGAGCCAACGGGAGCTGATCGAACCGGAACCGACTGAACCTTTGGAGCCAAATGA
GATTACAGTGGCATTGTTCTCTCATGAGAATGCCAATGTGTCTGAGCCAGAGGAAGTTCCACCATACCTC
GACAGAGACCTGGCTCCGAATGGAGAATTGGCCAACTCCTAG

Translation (153 aa):
MTRVAKKVHWSRAATAAAAAAKAKRSKLKKKRNPRSKLPKRSRHSLIRSHSRSCCCCLRSRSRTTLKITK
KGEQSLRRRIRRRIKRATELRLMRSQMEQSQRELIEPEPTEPLEPNEITVALFSHENANVSEPEEVPPYL
DRDLAPNGELANS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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