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Report for CCDS22706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22706.1 Public Mus musculus 8 Slc38a8 23 108 98 CCDS HistoryNCBI Gene:234788Re-query CCDS DB by CCDS ID:22706.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036748.14 ENSMUSP00000038438.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036748.14Link to Ensembl Protein Viewer:ENSMUSP00000038438.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036748Re-query CCDS DB by Protein ID:ENSMUSP00000038438
Original member NCBI NM_001009950.1 NP_001009950.1 Updated not alive Link to Nucleotide Sequence:NM_001009950.1Link to Protein Sequence:NP_001009950.1Re-query CCDS DB by Nucleotide ID:NM_001009950Re-query CCDS DB by Protein ID:NP_001009950
Current member NCBI NM_001009950.2 NP_001009950.1 Accepted alive Link to Nucleotide Sequence:NM_001009950.2Link to Protein Sequence:NP_001009950.1Re-query CCDS DB by Nucleotide ID:NM_001009950Re-query CCDS DB by Protein ID:NP_001009950Link to BLAST:NP_001009950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009950.1 432 Q5HZH7 432 100% 0 0

Chromosomal Locations for CCDS 22706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 119480749 119480842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119482628 119482679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119485450 119485658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119485977 119486124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119487306 119487420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119492245 119492302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119494196 119494297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119496061 119496193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119499661 119499859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119501001 119501189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGAAGGGCAGCCCAGAGGGAGCAGAGGCCCTCTGGAGAAGCCCCTCCCTGCTGCCACCCATCCCACTC
TGTCCTCACTGGGCGCCGTGTTCATCCTCTTGAAGTCCGCTCTGGGCGCCGGCCTGCTCAACTTCCCCTG
GGCCTTCTACAAGGCAGGAGGCATGCTGCCCACCTTCCTGGTGGCCCTGGTATCTTTGGTCTTCCTGATC
AGCGGCCTGGTCATCCTGGGCTACGCAGCATCTGTCAGTGGCCAGACCACCTACCAGGGTGTGGTCCGGG
AGCTATGTGGCCCCGCCATGGGGAAGCTGTGTGAGATCTGCTTCCTGACCAACCTGCTCATGATCTCTGT
GGCTTTCCTCAGAGTGATCGGGGACCAGCTGGAGAAGTTGTGTGACTCCCTCCTGCCTGACGCCCCACAG
CCTTGGTATGCAGCCCAGAACTTCACCCTGCCCCTGATCTCCATGCTGGTCATCTTTCCCCTGTCAGCAC
TTCGGGAAATTGCCCTCCAGAAGTACACCAGCATCCTAGGTACTCTGGCTGCCTGCTACCTTGCTCTGGT
CATCACGGTGCAATACTACCTGTGGCCCCAGGGCCTCATACGCCAGCCCGGTCCTTTGCTGAGCCCGTCT
CCCTGGACCTCTGTGTTTAGCGTGTTCCCTACCATCTGCTTTGGATTCCAGTGTCATGAGGCCGCCGTCT
CCATCTACTGCAGCATGTGGAACCAGAGCCTCTCCCACTGGACCCTGGTTTCTGTGCTGTCCTTGCTGGC
CTGCTGCCTTGTCTACACGCTGACAGGGGTTTATGGCTTCCTGACCTTCGGGCCTGAAGTTTCTGCTGAT
ATCTTAATGTCCTACCCAGGCAATGACACAGCCATCATCGTAGCACGCGTTCTCTTTGCGGTCTCCATTG
TGACTGTCTACCCCATTGTGCTATTCCTGGGGAGGTCTGTGATGCAGGACTTTTGGAAAAAGAGCTACTG
GGCCACACGGGGGCCTCCAGTGCTGGCTGACCCCTCAGGGCCTTGGGTTCGGCTGCCTCTGACCTTCCTG
TGGGTGGTGGTGACGCTCACCATGGCTCTGTTCCTGCCGGACCTCAGCGAGATCATTAGCATCATTGGTG
GTGTCAGTTCCTTCTTCATCTTCATCTTCCCAGGTTTGTGTCTCATCTGTGCTGTGGACACGGAACCCAT
GGGACCAAGAGTCAAGTGCTGCCTGGAGGCCTGGGGCATCCTCTCTGTGCTGGTGGGCACTTTCATCTTT
GGGCAGAGCACAGCGGTGGCCATGGTGGAGCTGCTCTGA

Translation (432 aa):
MEGQPRGSRGPLEKPLPAATHPTLSSLGAVFILLKSALGAGLLNFPWAFYKAGGMLPTFLVALVSLVFLI
SGLVILGYAASVSGQTTYQGVVRELCGPAMGKLCEICFLTNLLMISVAFLRVIGDQLEKLCDSLLPDAPQ
PWYAAQNFTLPLISMLVIFPLSALREIALQKYTSILGTLAACYLALVITVQYYLWPQGLIRQPGPLLSPS
PWTSVFSVFPTICFGFQCHEAAVSIYCSMWNQSLSHWTLVSVLSLLACCLVYTLTGVYGFLTFGPEVSAD
ILMSYPGNDTAIIVARVLFAVSIVTVYPIVLFLGRSVMQDFWKKSYWATRGPPVLADPSGPWVRLPLTFL
WVVVTLTMALFLPDLSEIISIIGGVSSFFIFIFPGLCLICAVDTEPMGPRVKCCLEAWGILSVLVGTFIF
GQSTAVAMVELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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