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Report for CCDS40478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40478.1 Public Mus musculus 8 Aars1 23 108 98 CCDS HistoryNCBI Gene:234734Re-query CCDS DB by CCDS ID:40478.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034441.7 ENSMUSP00000034441.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034441.7Link to Ensembl Protein Viewer:ENSMUSP00000034441.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034441Re-query CCDS DB by Protein ID:ENSMUSP00000034441
Original member Current member NCBI NM_146217.4 NP_666329.2 Accepted alive Link to Nucleotide Sequence:NM_146217.4Link to Protein Sequence:NP_666329.2Re-query CCDS DB by Nucleotide ID:NM_146217Re-query CCDS DB by Protein ID:NP_666329Link to BLAST:NP_666329.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666329.2 968 Q8BGQ7 968 100% 0 0

Chromosomal Locations for CCDS 40478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111036930 111037073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111040132 111040320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111040597 111040742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111041478 111041669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111042241 111042385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111042663 111042808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111043233 111043341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111043643 111043793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111044878 111045002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111045527 111045671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111046931 111047109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111047912 111048025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111049699 111049905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111050345 111050529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111052413 111052521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111053191 111053304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111053889 111054008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111054125 111054211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111054509 111054622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111055019 111055204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGGATGCCACTTTAACAGCACGAGAGATCCGAGAGCGGTTTATAAATTTCTTCAGACGAAATGAGCACA
CCTATGTCCACTCTTCCGCCACCATCCCTCTGGATGACCCCACTCTGCTCTTCGCCAACGCTGGCATGAA
CCAGTTCAAACCCATCTTCCTAAACACAATCGACCCATCTCACCCTATGGCGAAGCTGAGCAGAGCTGCC
AATACCCAGAAATGCATCCGAGCTGGGGGCAAGCACAACGACCTGGATGACGTGGGCAAGGATGTCTACC
ACCACACTTTCTTTGAGATGCTGGGCTCCTGGTCTTTTGGGGACTATTTCAAGGAATTGGCATGTAAGAT
GGCCCTGGAACTTCTTACCCAGGAGTTTGGTATTCCAGTTGAAAGACTCTATGTCACTTACTTTGGTGGT
GATGAGGCGGCCGGCCTAGAGCCAGATCTGGAGTGCAGACAGATTTGGCAAAATTTAGGACTGGATGAAG
CCAGAATCCTCCCTGGCAACATGAAGGACAACTTCTGGGAGATGGGTGACACAGGCCCCTGTGGTCCCTG
CAGCGAGATCCACTATGACCGCATTGGTGGCAGGGACGCCGCACACCTTGTCAACCAGGATGACCCCAAT
GTGCTGGAGATCTGGAACCTCGTGTTCATCCAGTATAACAGGGAGTCGGATGGTGTTCTGAAACCTCTTC
CCAAGAAAAGCATCGACACAGGGATGGGCCTAGAGAGGCTGGTGTCTGTGCTGCAGAACAAGATGTCCAA
CTACGACACCGACCTTTTCATGCCTTACTTCGAAGCCATTCAGAAGGGCACCGGCGCCCGGCCGTATACT
GGGAAGGTTGGTGCTGAGGATGCAGACGGAATCGACATGGCCTACCGGGTTCTGGCTGACCACGCCCGGA
CCATCACTGTGGCGCTGGCTGATGGCGGCCGGCCTGACAACACAGGACGGGGGTACGTGCTGAGACGGAT
CCTTCGCCGAGCTGTTCGGTATTCCCATGAGAAACTGAATGCCAGCAGGGGTTTCTTCGCTACATTGGTT
GATGTTGTCGTTCAATCCCTGGGAGACGCATTTCCTGAGCTGAAGAAGGACCCAGAGATGGTGAAGGACA
TCATTAATGAAGAAGAGGTGCAGTTTCTCAAGACTCTCAGCCGAGGGCGGCGCATCCTGGACCGAAAAAT
TCAGAGCTTAGGAGACTGCAAAACCATCCCAGGTGACACCGCTTGGCTCCTCTATGATACTTATGGATTC
CCAGTGGACCTCACTGGATTGATTGCTGAAGAGAAGGGCCTGGTGGTAGATATGAATGGCTTTGAGGAAG
AGAGGAGACTGGCCCAGCTGAAGTCACAGGGCAAGGGAGCAGGGGACGAAGACCTCATCATGCTGGACAT
TTACGCTATTGAAGAGCTCCGGGCAAAGGGTTTGGAGGCCACAGATGATTCTCCAAAGTATAACTACCAA
TCAGACTCCAGTGGTAGCTACGTGTTTGAGTGTACAGTGGCTACCGTGCTTGCTCTGCGTCGGGAAAAGA
TGTTTGTGGACGAGGTGGTCACTGGCCAGGAGTGTGGAGTGGTGCTGGACAAGACCTGTTTCTATGCGGA
GCAAGGAGGGCAGATCTACGATGAAGGCTACTTGGTGAAGGTCGACGACAGCAGTGAGGACAAAACCGAG
TTTACAGTGAAGAACGCTCAGGTCCGAGGCGGGTACGTGCTGCACATAGGAACGATATATGGTAACCTGA
AAGTGGGGGATCAAGTCCGGCTGTTTATTGATGAGCCCCGGCGGAGACCCGTCATGAGCAACCACACAGC
TACACACATCCTCAACTTCGCCTTGCGCTCGGTGCTTGGGGAAGCGGACCAGAAAGGTTCACTGGTTGCT
CCTGACCGCCTTCGGTTTGACTTCACTGCCAAGGGAGCCATGTCCACCCAGCAAATCAAGAAGGCTGAAG
AGATTGTCAATGGCATGATTGAGGCAGCTAAGCCTGTCTACACCCAGGATTGTCCCCTGGCAGCAGCAAA
AGCCATCCAGGGCCTTCGAGCTGTGTTTGATGAGACCTATCCTGACCCCGTTCGAGTCGTCTCCATTGGG
GTCCCCGTGTCAGAGCTGCTGGATGACCCGTGTGGGCCTGCTGGCTCCCTTACTTCTGTTGAGTTCTGTG
GAGGAACACATCTACGGAATTCTAGCCACGCAGGCGCTTTTGTGATAGTGACAGAAGAAGCTATTGCCAA
GGGTATCCGGAGGATTGTTGCTGTCACAGGTGCTGAAGCCCAGAAGGCTCTCAGGAAGTCAGAAACCTTG
AAGAAATCTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGG
AAATTGCTGACCTCGGTGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGAAAGATGAACAACGAGA
GACTCTGAAGTCCCTGAAGAAAGTCATGGATGACCTAGACCGGGCCAGCAAAGCCGATGTGCAGAAGCGA
GTGTTAGAGAAGACAAAGCAGCTGATTGACAGCAACCCCAACCAGCCGCTGGTCATCCTGGAGATGGAGA
GTGGAGCATCGGCCAAGGCCCTGAATGAAGCGTTGAAGCTTTTCAAGACGCATTCTCCTCAGACATCTGC
CATGCTGTTCACGGTGGACAATGAGGCTGGCAAGATCACGTGCTTGTGCCAGGTTCCCCAGAATGCAGCC
AACCGGGGACTGAAAGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCTGATGGATGGTAAAGGCGGTGGCA
AGGACATGTCCGCCCAGGCCACAGGCAAGAACGTGGGCTGCCTTCAGGAAGCACTGCAGCTGGCTACCTC
CTTTGCCCAGCTCCGTCTGGGAGATGTGAAGAACTGA

Translation (968 aa):
MDATLTAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAA
NTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPVERLYVTYFGG
DEAAGLEPDLECRQIWQNLGLDEARILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPN
VLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYT
GKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLV
DVVVQSLGDAFPELKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGF
PVDLTGLIAEEKGLVVDMNGFEEERRLAQLKSQGKGAGDEDLIMLDIYAIEELRAKGLEATDDSPKYNYQ
SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTE
FTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQKGSLVA
PDRLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIG
VPVSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL
KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRASKADVQKR
VLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKITCLCQVPQNAA
NRGLKASEWVQQVSGLMDGKGGGKDMSAQATGKNVGCLQEALQLATSFAQLRLGDVKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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