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Report for CCDS22305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22305.1 Public Mus musculus 8 Neil3 23 108 98 CCDS HistoryNCBI Gene:234258Re-query CCDS DB by CCDS ID:22305.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22305.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047768.10 ENSMUSP00000041909.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047768.10Link to Ensembl Protein Viewer:ENSMUSP00000041909.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047768Re-query CCDS DB by Protein ID:ENSMUSP00000041909
Original member Current member NCBI NM_146208.2 NP_666320.1 Accepted alive Link to Nucleotide Sequence:NM_146208.2Link to Protein Sequence:NP_666320.1Re-query CCDS DB by Nucleotide ID:NM_146208Re-query CCDS DB by Protein ID:NP_666320Link to BLAST:NP_666320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666320.1 606 Q8K203-1 606 100% 0 0

Chromosomal Locations for CCDS 22305.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 53587145 53587327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53588925 53589099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53599099 53599519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53600951 53601120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53605633 53605799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53607328 53607402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53608715 53608928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53609404 53609538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53623618 53623742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53638756 53638911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGTGGAAGGGCCAGGGTGTACACTGAATGGAGAGAAGATCCGGGCACGAGTGCTACCGGGGCAGGCGG
TGACTGGTGTGCGGGGCACAGCTCTGCAGAGCCTCCTGGGCCCTGCCATGTCCCCTGCCGCCTCCCTGGC
TGATGTCGCTACCTCGGCTGCTCCAATGAATGCTAAGGATTCTGGCTGGAAACTCTTGAGACTGTTTAAT
GGATATGTTTACAGTGGCGTGGAAACCTTAGGGAAGGAGCTGTTTATGTACTTTGGCCCCAGAGCTTTAC
GGATTCATTTCGGAATGAAAGGCTCCATCTTGATTAACCCACGGGAGGGTGAGAACAGAGCTGGGGCTTC
TCCAGCCTTGGCGGTGCAGCTCACCAGAGACTTGATCTGCTTCTATGACTCTTCAGTAGAACTCAGAAAT
TCGGTGGAAAGCCAACAGAGAGTCAGAGTGATGGAAGAGTTGGATATATGTTCACCAAAGTTCAGTTTCT
CAAGAGCAGAGAGTGAAGTGAAAAAGCAGGGAGATCGGATGCTGTGTGATGTGTTGCTGGATCAGAGGGT
GTTGCCTGGCGTGGGCAACATCATCAAAAATGAAGCACTCTTTGACAGTGGTCTTCATCCGGCTGTTAAG
GTGTGTCAACTATCAGACAAACAGGCCTGTCACCTTGTGAAGATGACTCGGGATTTCAGCATTCTCTTCT
ACAGGTGCTGTAAAGCAGGATCTGCCATTTCTAAACACTGTAAGGTTTACAAGCGTCCTAACTGTGATCA
GTGCCACAGCAAAATTACTGTGTGTCGCTTTGGGGAGAACAGCAGGATGACATATTTCTGTCCTCACTGT
CAGAAAGAAAACCCTCAATGTGTTCAAGTATGCCAGCTGCCAACAAGAAACACTGAAATCAGCTGGACTC
CTAGGGGAGAGGATTGCTTTACGGACTCAGTGGCTCGGAAGTCTGAAGAGCAGTGGTCCTGTGTGGTTTG
TACTCTCATAAACAGACCCTCGGCTAAGGCCTGTGATGCTTGCTTGACCACAAGGCCTCTGGATTCAGTG
CTCAAGAATAGAGAAAATTCCATTGCCTTCAACAACTTAGTGAAGTACCCTTGTAATAACTTTGAGAACA
CACACACTGAAGTAAAGATCAACAGGAAAACTGCGTTTGGAAATACGACCCTTGTTTTGACTGATTTAAG
CAATAAATCCAGTGCTTTGGCCAGAAAGAAAAGAGCAAACCACACAATAGATGGGGAATCTCAAATGTTT
CTCCCTACAGACATAGGTTTTAGTGATTCACAGCACCCCTCCAAAGAAGGAATAAACTATATAACTCAAC
CATCCAATAAGGTAAACATATCACCTACAGTTTGTGCCCAGTCTAAATTATTTAGTTCAGCACATAAAAA
ATTCAAACCAGCTCACACTTCTGCAACAGAACTTAAAAGTTACAACTCTGGACTTTCTAACAGTGAACTC
CAAACCAATAGGACACGTGGCCATCATTCCAAAAGTGATGGCAGCCCTCTGTGCAAGATGCACCACCGCC
GTTGTGTTCTCCGAGTTGTGAGGAAAGATGGAGAAAACAAGGGGAGGCAGTTTTATGCCTGTTCTCTGCC
GAGAGGAGCACAGTGCGGATTTTTTGAATGGGCAGACCTGTCCTTCCCGTTCTGCAGACATGGCAAGCGC
TCCATTATGAAAACTGTGCTGAAGATTGGACCTAATAATGGGAAGAATTTTTTTGTATGTCCTTTGGAGA
AAAAAAAGCAGTGTAATTTTTTCCAGTGGGCCGAAAATGGACCAGGAATGGAAATTGTTCCAGGATGCTA
A

Translation (606 aa):
MVEGPGCTLNGEKIRARVLPGQAVTGVRGTALQSLLGPAMSPAASLADVATSAAPMNAKDSGWKLLRLFN
GYVYSGVETLGKELFMYFGPRALRIHFGMKGSILINPREGENRAGASPALAVQLTRDLICFYDSSVELRN
SVESQQRVRVMEELDICSPKFSFSRAESEVKKQGDRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVK
VCQLSDKQACHLVKMTRDFSILFYRCCKAGSAISKHCKVYKRPNCDQCHSKITVCRFGENSRMTYFCPHC
QKENPQCVQVCQLPTRNTEISWTPRGEDCFTDSVARKSEEQWSCVVCTLINRPSAKACDACLTTRPLDSV
LKNRENSIAFNNLVKYPCNNFENTHTEVKINRKTAFGNTTLVLTDLSNKSSALARKKRANHTIDGESQMF
LPTDIGFSDSQHPSKEGINYITQPSNKVNISPTVCAQSKLFSSAHKKFKPAHTSATELKSYNSGLSNSEL
QTNRTRGHHSKSDGSPLCKMHHRRCVLRVVRKDGENKGRQFYACSLPRGAQCGFFEWADLSFPFCRHGKR
SIMKTVLKIGPNNGKNFFVCPLEKKKQCNFFQWAENGPGMEIVPGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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