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Report for CCDS40144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40144.1 Public Mus musculus 7 Setd1a 23 108 98 CCDS HistoryNCBI Gene:233904Re-query CCDS DB by CCDS ID:40144.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047157.12 ENSMUSP00000037600.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047157.12Link to Ensembl Protein Viewer:ENSMUSP00000037600.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047157Re-query CCDS DB by Protein ID:ENSMUSP00000037600
Original member Current member EBI ENSMUST00000047075.13 ENSMUSP00000047672.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047075.13Link to Ensembl Protein Viewer:ENSMUSP00000047672.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047075Re-query CCDS DB by Protein ID:ENSMUSP00000047672
Original member Current member NCBI NM_178029.3 NP_821172.2 Accepted alive Link to Nucleotide Sequence:NM_178029.3Link to Protein Sequence:NP_821172.2Re-query CCDS DB by Nucleotide ID:NM_178029Re-query CCDS DB by Protein ID:NP_821172Link to BLAST:NP_821172.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_821172.2 1716 E9PYH6 1716 100% 0 0

Chromosomal Locations for CCDS 40144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127778128 127778277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127778506 127778601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127780385 127780655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127783629 127783750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127783973 127784202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127784848 127785736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127785881 127786672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127787126 127787302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127787499 127787586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127788197 127788354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127788482 127788569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127791215 127791532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127795643 127796698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127797074 127797246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127797327 127797437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127797604 127797723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127799091 127799228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127799306 127799479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5151 nt):
ATGGACCAGGAAGGTGGGGGAGACGGGCAGAAAGCCCCGAGCTTCCAGTGGCGGAACTACAAGCTCATAG
TGGATCCTGCTTTGGACCCTGCTTTGCGCAGGCCTTCCCAGAAGGTGTACCGCTATGACGGAGTCCACTT
CAGTGTCAGTGACTCAAAGTATACCCCCGTGGAAGACCTCCAGGACCCCCGCTGTCATGTCAGGTCCAAA
GCCAGAGACTTTTCCCTCCCGGTTCCTAAGTTTAAGCTGGATGAGTTCTATATTGGACAGATACCACTGA
AGGAAGTAACTTTTGCGAGGCTCAATGACAATGTGAGGGAAACCTTCCTGAAGGATATGTGCCGGAAATA
TGGAGAGGTGGAAGAAGTGGAGATCCTTCTTCATCCCCGCACTCGAAAGCACCTAGGCCTGGCCCGTGTG
CTCTTCACCAGCACTCGGGGCGCCAAGGAAACTGTCAAAAACCTCCACCTCACCTCTGTCATGGGCAACA
TCATTCATGCCCAGCTTGATATCAAAGGCCAACAACGAATGAAGTACTATGAATTGATTGTCAATGGCTC
TTACACTCCTCAGACTGTGCCCACTGGGGGCAAGGCCTTGAGTGAGAAGTTCCAGGGTTCTGGTGCAGCC
GCTGAGACGACTGAAGCCCGCCGACGGTCTTCCTCGGACACAGCTGCCTATCCAGCAGGCACTACTGTGG
GGGGCACCCCTGGCAATGGCACTCCCTGCTCCCAAGATACAAATTTCTCCAGCAGCCGACAAGATACTCC
ATCTTCCTTTGGCCAGTTCACCCCTCAGTCCTCCCAAGGAACCCCCTACACATCTCGGGGTAGCACCCCC
TACTCTCAGGACTCTGCCTACTCCAGCAGCACCACTTCAACCTCCTTCAAACCCCGGCGGTCAGAGAACA
GCTATCAAGATTCTTTTTCTCGCCGCCATTTCTCTACATCTTCAGCCCCTGCAACCACCGCTACTGCCAC
CTCAGCAACTGCTGCAGCTACTGCAGCCTCCTCCTCATCTTCCTCCTCCTCGTCATCGTCCTCCTCCTCG
TCGTCTTCTTCCTCAGCCTCTCAGTTTCGTGGTTCTGACTCTAGCTACCCAGCATATTATGAAAGCTGGA
ATCGTTACCAGCGCCATACTTCCTATCCACCTCGCCGGGCAACTAGAGAGGACCCTTCTGGGGCTTCATT
TGCCGAAAATACGGCTGAGCGCTTCCCACCTTCCTATACCTCCTATTTGGCCCCTGAGCCTAACCGATCC
ACTGACCAAGACTACCGGCCTCCTGCCTCAGAGGCCCCACCTCCAGAACCTCCAGAACCTGGTGGTGGTG
GTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGCACCCAGCCCTGAGAGAGA
AGAAGCCCGGACTCCCCCACGCCCAGCTTCCCCTGCACGCTCTGGCTCCCCAGCCCCAGAGACCACCAAC
GAGAGTGTGCCCTTTGCTCAGCACAGCAGTTTGGATTCCCGTATTGAAATGCTGCTGAAGGAACAACGCT
CCAAGTTTTCTTTCTTGGCTTCTGATACAGAGGAAGAGGAAGAGAACAGCAGTGCAGGCCCTGGGGCTAG
AGATGCAGGGGCTGAGGTGCCTTCTGGGGCAGGTCATGGGCCCTGTACACCTCCTCCTGCACCAGCTAAT
TTTGAAGATGTAGCACCTACAGGGAGTGGAGAGCCAGGGGCTGCCCGGGAGTCACCAAAGGCCAATGGAC
AGAACCAGGCTTCTCCATGTTCTTCCGGAGAAGATATGGAGATCTCTGATGATGACAGGGGTGGCTCACC
ACCTCCAGCCCCAACACCCCCCCAGCAGCCGCCACCGCCACCACCTCCCCCTCCTCCCCCCCCTCCTCCC
TACCTTGCTTCCCTTCCCCTTGGCTATCCTCCCCACCAACCTGCCTACCTCCTCCCACCCCGCCCAGATG
GACCACCCCCCCCTGAGTACCCTCCGCCACCTCCTCCACCACCACCCCACATCTATGACTTTGTGAACTC
CCTGGAACTTATGGATCGACTTGGGGCACAGTGGGGAGGGATGCCCATGTCCTTCCAGATGCAGACCCAG
ATGTTAACACGGCTCCACCAGTTACGGCAGGGCAAGGGATTGACTGCAGCCTCAGCTGGTCCTCCTGGCG
GGGCTTTTGGCGAGGCCTTTCTCCCTTTTCCACCTCCACAAGAGGCAGCCTATGGCTTGCCCTATGCTCT
GTACACACAAGGGCAAGAAGGTCGTGGGTCGTACTCCCGGGAGGCCTACCACCTGCCCTTGCCTATGGCA
GCCGAGCCCCTGCCCTCTTCCTCAGTCTCGGGAGAGGAGGCGCGGCTGCCTCATAGGGAGGAAGCAGAGA
TAGCAGAAAGCAAGGTCCTACCATCAGCAGGCACAGTGGGTCGTGTGCTGGCTACCCTTGTCCAAGAGAT
GAAGAGCATTATGCAGCGAGACCTTAATCGAAAGATGGTCGAGAATGTGGCCTTTGGAGCCTTTGACCAG
TGGTGGGAGAGCAAGGAAGAGAAGGCCAAGCCATTCCAGAATGCAGCCAAACAGCAAGCCAAGGAAGAGG
ACAAAGAAAAGATGAAGCTCAAAGAGCCAGGCATGCTGTCCCTCGTAGACTGGGCCAAGAGTGGCGGTAT
CACAGGCATTGAGGCCTTTGCCTTTGGGTCAGGGCTTCGAGGGGCCCTGCGGTTGCCTTCATTCAAGGTA
AAACGGAAAGAGCCATCAGAAATTTCAGAGGCAAGTGAGGAAAAGAGGCCCAGGCCCTCTACTCCAGCTG
AGGAAGATGAAGATGATCCTGAGCGAGAGAAGGAAGCTGGAGAACCAGGACGTCCAGGGACCAAGCCTCC
GAAGCGAGATGAAGAACGGGGCAAGACCCAAGGCAAACACCGAAAATCCTTTACTCTGGACAGTGAAGGG
GAGGAGGCGTCCCAGGAGTCTTCCTCAGAGAAGGATGAGGATGATGATGATGAAGATGAGGAAGATGAAG
AACAGGAGGAAGCTGTGGATGCCACCAAGAAGGAAGCAGAGGCATCGGATGGTGAGGATGAGGACAGTGA
CTCGTCCTCCCAGTGCTCTCTGTATGCGGATTCAGATGGTGAAAATGGCAGCACATCAGACTCCGAGAGT
GGCAGCTCGTCTTCCTCTTCCTCATCGTCTTCCTCCTCTTCCTCCTCTTCCTCATCAGAGTCCTCCTCTG
AGGAAGAGGAGCAGTCAGCAGTCATTCCCTCAGCTTCACCCCCCAGAGAAGTTCCAGAGCCCCTTCCAGC
TCCTGATGAGAAGCCTGAGACAGACGGGCTTGTAGATTCCCCTGTCATGCCTCTCTCTGAAAAGGAGACA
TTGCCCACACAGCCTGCAGGCCCTGCTGAAGAACCACCTCCTAGTGTACCACAGCCTCCAGCAGAGCCAC
CCGCCGGACCGCCAGACGCTGCCCCCCGCCTGGATGAGCGCCCCTCTTCTCCTATCCCTCTCCTACCCCC
ACCCAAGAAACGCCGGAAAACTGTTTCCTTCTCTGCTGCAGAGGAGGCACCAGTCCCAGAACCTTCCACA
GCTGCCCCACTGCAGGCCAAGTCTTCTGGTCCAGTCTCTCGAAAAGTCCCCCGGGTCGTAGAGCGGACCA
TTCGTAACCTCCCCCTGGACCATGCGTCTCTGGTCAAGAGTTGGCCTGAGGAGGTCGCCCGAGGGGGTCG
GAATCGAGCTGGAGGTCGTGTGCGCTCTACTGAAGAAGAGGAGGCCACTGAGTCAGGGACAGAAGTAGAC
CTGGCAGTACTGGCTGACCTGGCCCTGACCCCAGCCCGACGTGGGTTGGCTACCCTACCCACTGGTGACG
ACTCAGAGGCCACAGAGACCTCAGATGAGGCTGAGCGCCCAAGCCCTCTACTCAGCCACATCCTCTTGGA
ACACAACTATGCCCTAGCCATCAAGCCCCCGCCTACCACACCAGCACCTCGGCCCCTGGAGCCAGCTCCT
GCCCTTGCTGCACTCTTCAGCTCTCCAGCTGATGAAGTCTTAGAGGCCCCTGAGGTGGTGGTGGCTGAGG
CAGAGGAGCCAAAGCAACAGCTGCAGCAGCAGCATCCAGAGCAGGAAGGAGAAGAGGAGGAGGAAGATGA
AGAGGAGGAGTCCGAGTCTTCAGAAAGCAGCAGCAGCAGCAGCAGTGATGAGGAAGGGGCAATCAGGAGG
CGTAGCCTCCGCTCCCACACTCGAAGAAGAAGGCCACCACTCCCACCCCCACCCCCACCTCCTCCTTCCT
TTGAGCCGAGAAGTGAATTTGAGCAGATGACCATCTTGTATGATATTTGGAACTCAGGCCTTGACTTGGA
AGACATGAGCTATTTGCGACTCACATATGAACGGCTGCTGCAGCAAACCAGTGGCGCTGACTGGCTTAAT
GACACCCACTGGGTCCAGCACACAATCACCAACCTAAGCACTCCAAAGCGCAAAAGACGGCCCCAAGATG
GGCCCCGGGAGCATCAGACAGGCTCTGCACGCAGCGAAGGTTATTACCCCATTAGCAAGAAGGAGAAAGA
TAAATACTTGGATGTGTGCCCCGTCTCGGCCCGGCAGCTGGAAGGTGGAGACACTCAGGGGACTAATCGG
GTGCTTTCTGAGCGACGGTCAGAGCAGCGGCGGTTACTAAGCGCTATTGGCACCTCAGCCATCATGGACA
GTGATCTGCTAAAGCTAAACCAGCTCAAGTTTCGGAAGAAGAAACTCCGATTTGGCCGGAGCCGTATCCA
TGAGTGGGGTCTGTTTGCCATGGAACCCATTGCCGCTGATGAGATGGTGATCGAATATGTTGGCCAGAAC
ATCCGCCAGATGGTAGCGGACATGCGGGAAAAGCGCTACGTGCAGGAGGGCATTGGCAGCAGCTACCTTT
TCCGGGTGGATCACGACACCATCATTGATGCCACCAAGTGTGGCAACCTCGCCAGGTTCATCAACCACTG
CTGCACGCCCAACTGCTATGCGAAGGTGATCACCATTGAGTCTCAGAAAAAGATTGTCATCTACTCGAAG
CAGCCCATCGGCGTGGATGAGGAGATCACCTACGACTACAAGTTCCCACTAGAAGACAACAAGATTCCGT
GTCTGTGCGGCACTGAAAGTTGCCGTGGCTCCCTCAACTGA

Translation (1716 aa):
MDQEGGGDGQKAPSFQWRNYKLIVDPALDPALRRPSQKVYRYDGVHFSVSDSKYTPVEDLQDPRCHVRSK
ARDFSLPVPKFKLDEFYIGQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARV
LFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRMKYYELIVNGSYTPQTVPTGGKALSEKFQGSGAA
AETTEARRRSSSDTAAYPAGTTVGGTPGNGTPCSQDTNFSSSRQDTPSSFGQFTPQSSQGTPYTSRGSTP
YSQDSAYSSSTTSTSFKPRRSENSYQDSFSRRHFSTSSAPATTATATSATAAATAASSSSSSSSSSSSSS
SSSSSASQFRGSDSSYPAYYESWNRYQRHTSYPPRRATREDPSGASFAENTAERFPPSYTSYLAPEPNRS
TDQDYRPPASEAPPPEPPEPGGGGGGSGGGGGGGGGGGGGAPSPEREEARTPPRPASPARSGSPAPETTN
ESVPFAQHSSLDSRIEMLLKEQRSKFSFLASDTEEEEENSSAGPGARDAGAEVPSGAGHGPCTPPPAPAN
FEDVAPTGSGEPGAARESPKANGQNQASPCSSGEDMEISDDDRGGSPPPAPTPPQQPPPPPPPPPPPPPP
YLASLPLGYPPHQPAYLLPPRPDGPPPPEYPPPPPPPPPHIYDFVNSLELMDRLGAQWGGMPMSFQMQTQ
MLTRLHQLRQGKGLTAASAGPPGGAFGEAFLPFPPPQEAAYGLPYALYTQGQEGRGSYSREAYHLPLPMA
AEPLPSSSVSGEEARLPHREEAEIAESKVLPSAGTVGRVLATLVQEMKSIMQRDLNRKMVENVAFGAFDQ
WWESKEEKAKPFQNAAKQQAKEEDKEKMKLKEPGMLSLVDWAKSGGITGIEAFAFGSGLRGALRLPSFKV
KRKEPSEISEASEEKRPRPSTPAEEDEDDPEREKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFTLDSEG
EEASQESSSEKDEDDDDEDEEDEEQEEAVDATKKEAEASDGEDEDSDSSSQCSLYADSDGENGSTSDSES
GSSSSSSSSSSSSSSSSSSESSSEEEEQSAVIPSASPPREVPEPLPAPDEKPETDGLVDSPVMPLSEKET
LPTQPAGPAEEPPPSVPQPPAEPPAGPPDAAPRLDERPSSPIPLLPPPKKRRKTVSFSAAEEAPVPEPST
AAPLQAKSSGPVSRKVPRVVERTIRNLPLDHASLVKSWPEEVARGGRNRAGGRVRSTEEEEATESGTEVD
LAVLADLALTPARRGLATLPTGDDSEATETSDEAERPSPLLSHILLEHNYALAIKPPPTTPAPRPLEPAP
ALAALFSSPADEVLEAPEVVVAEAEEPKQQLQQQHPEQEGEEEEEDEEEESESSESSSSSSSDEEGAIRR
RSLRSHTRRRRPPLPPPPPPPPSFEPRSEFEQMTILYDIWNSGLDLEDMSYLRLTYERLLQQTSGADWLN
DTHWVQHTITNLSTPKRKRRPQDGPREHQTGSARSEGYYPISKKEKDKYLDVCPVSARQLEGGDTQGTNR
VLSERRSEQRRLLSAIGTSAIMDSDLLKLNQLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQN
IRQMVADMREKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAKVITIESQKKIVIYSK
QPIGVDEEITYDYKFPLEDNKIPCLCGTESCRGSLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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